Gene omics information

Query gene ID	TaAffx.11930.1.S1_s_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	83.1	TaAffx.11930.1.S1_s_at	CA639901	-	-	3e-5	At2g30330	GCN5L1 family protein	S.X.	H.G.	Please select
0.77	90.8	Ta.27783.1.S1_at	BQ237765	-	-	2e-19	At4g15415	ATB' GAMMA	S.X.	H.G.	Please select
0.67	86.3	Ta.8457.2.A1_at	BQ161925	-	-	1e+1	At4g00220	JLO (JAGGED LATERAL ORGANS)	S.X.	H.G.	Please select
0.59	79.8	Ta.3348.1.S1_a_at	BJ314622	-	-	3e-52	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	S.X.	H.G.	Please select
0.50	72.4	Ta.8457.1.A1_at	BE430699	-	-	6e+0	At2g20619	-	S.X.	H.G.	Please select
0.47	67.9	Ta.13995.1.S1_at	CK195574	-	-	1e-3	At5g56190	WD-40 repeat family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.2	97.5	GSM139933	Anther mature anthers rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.2	97.5	GSM139932	Anther mature anthers rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.9	97.3	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
4.6	97.0	GSM139931	Anther maturea nthers rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.0	96.3	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
3.4	95.2	GSM298091	Leaf tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.1	94.5	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.7	93.3	GSM250906	TcLr34_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.7	93.3	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.66	0	741	TaAffx.11930.2.S1_at	BJ268177	-	-	2e-5	At2g30330	GCN5L1 family protein	C.G.	S.X.	Please select
0.64	0	726	TaAffx.11930.3.S1_x_at	CA606100	-	-	1e+0	At5g43640	40S ribosomal protein S15 (RPS15E)	C.G.	S.X.	Please select
0.64	0	726	TaAffx.11930.3.S1_at	CA606100	-	-	1e+0	At5g43640	40S ribosomal protein S15 (RPS15E)	C.G.	S.X.	Please select
0.04	1e-1	38	TaAffx.8804.3.S1_s_at	CA732695	-	-	1e-5	At4g35100	PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3)	C.G.	S.X.	Please select
0.02	1e-1	38	TaAffx.8804.1.S1_s_at	CK164001	-	-	1e-11	At2g37180	RD28 (RESPONSIVE TO DESICCATION 28)	C.G.	S.X.	Please select
0.03	1e-1	38	Ta.3079.1.S1_x_at	BJ208202	-	-	1e+0	At2g47880	glutaredoxin family protein	C.G.	S.X.	Please select
0.03	1e-1	38	Ta.3079.3.S1_x_at	CA594036	-	-	4e+0	At1g68500	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	38	Ta.3079.1.S1_at	BJ208202	-	-	1e+0	At2g47880	glutaredoxin family protein	C.G.	S.X.	Please select
0.03	1e-1	38	Ta.3079.3.S1_at	CA594036	-	-	4e+0	At1g68500	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	3e-5	50	Arabidopsis thaliana	At2g30330	817583	GCN5L1 family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	3e-15	83	Glycine max	Gma.4083.1.S1_at	CA851035	-	-	3e+0	At2g21250	mannose 6-phosphate reductase (NADPH-dependent), putative	C.G.	S.X.	Please select
0.03	2e-1	36	Hordeum vulgare	Contig2060_s_at	Contig2060	-	-	1e+0	At1g03950	VPS2.3 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3)	C.G.	S.X.	Please select
0.35	9e-50	198	Oryza sativa	Os11g0112300	AK120830.1	-	GCN5-like protein 1 (RT14 protein homolog)	3e-8	At2g30330	GCN5L1 family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e-7	57	Populus trichocarpa	PtpAffx.20781.1.S1_at	CV256053	hypothetical protein	-	4e-5	At2g30330	GCN5L1 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	5e-1	34	Vitis vinifera	1621877_at	CB922518	hypothetical protein LOC100241998	-	6e-6	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	C.G.	S.X.	Please select
0.39	2e-68	258	Zea mays	Zm.8376.1.S1_at	BM073880	hypothetical protein LOC100280303	-	4e-1	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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