Gene omics information

Query gene ID	TaAffx.116570.1.S1_x_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	TaAffx.116570.1.S1_x_at	AL825027	-	-	2e-8	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	S.X.	H.G.	Please select
0.83	93.4	TaAffx.116570.1.S1_at	AL825027	-	-	2e-8	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	S.X.	H.G.	Please select
0.50	72.4	TaAffx.108556.1.S1_at	CA692789	-	-	2e-2	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	S.X.	H.G.	Please select
0.50	72.4	TaAffx.108556.1.S1_x_at	CA692789	-	-	1e+0	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	S.X.	H.G.	Please select
0.50	72.4	TaAffx.116570.1.S1_s_at	AL825027	-	-	2e-8	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	S.X.	H.G.	Please select
0.46	66.8	Ta.28.1.S1_at	Y18212.1	glucan endo-1,3-beta-D-glucosidase	-	6e-1	At3g23360	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.4	99.8	GSM143507	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
24.3	99.8	GSM143505	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
23.5	99.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
22.7	99.8	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
19.9	99.7	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
18.6	99.7	GSM143502	Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
17.2	99.6	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
16.4	99.6	GSM250894	TcLr34_3dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
12.2	99.4	GSM143518	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
11.5	99.3	GSM250892	TcLr1_3dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.99	0	940	TaAffx.116570.1.S1_s_at	AL825027	-	-	2e-8	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please select
0.99	0	940	TaAffx.116570.1.S1_at	AL825027	-	-	2e-8	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please select
0.71	3e-161	567	TaAffx.116570.2.S1_at	CA684050	-	-	2e-4	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please select
0.54	1e-77	289	TaAffx.108556.1.S1_at	CA692789	-	-	2e-2	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please select
0.54	1e-77	289	TaAffx.108556.1.S1_x_at	CA692789	-	-	1e+0	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please select
0.32	3e-41	169	Ta.9226.1.S1_at	CD915938	Pathogenesis-related protein 4	-	7e+0	At5g45890	SAG12 (SENESCENCE-ASSOCIATED GENE 12)	C.G.	S.X.	Please select
0.34	3e-22	105	TaAffx.128595.1.S1_at	CK216241	-	-	6e+0	At5g37250	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.04	7e-2	38	Ta.20878.2.S1_x_at	CA619683	-	-	1e+1	At5g35230	unknown protein	C.G.	S.X.	Please select
0.03	7e-2	38	Ta.20878.1.S1_x_at	CA622910	-	-	1e-3	At2g06520	PSBX (photosystem II subunit X)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	2e-8	59	Arabidopsis thaliana	At3g04720	819632	PR4 (PATHOGENESIS-RELATED 4)	Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-1	36	Glycine max	HgAffx.15331.1.S1_at	CB281663	-	-	4e+0	At3g52260	pseudouridine synthase family protein	C.G.	S.X.	Please select
0.70	2e-145	513	Hordeum vulgare	Contig6576_at	Contig6576	-	-	6e-6	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please select
0.28	7e-31	135	Oryza sativa	Os11g0592000	AK121059.1	-	Barwin	7e-3	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	1e+0	34	Populus trichocarpa	Ptp.2463.2.S1_at	DN484793	hypothetical protein	-	4e-1	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	8e-8	56	Vitis vinifera	1618835_s_at	BQ797163	hypothetical protein LOC100255405	-	2e-11	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please select
0.44	4e-41	167	Zea mays	Zm.2227.1.A1_at	BM381059	hypothetical protein LOC100191593	-	6e-3	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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