Gene omics information

Query gene ID	TaAffx.115939.2.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.3	TaAffx.115939.2.S1_at	CA677586	-	-	7e-2	At1g30800	-	S.X.	H.G.	Please select
0.73	89.1	TaAffx.4857.1.S1_at	CA730111	-	-	4e+0	At1g77682	-	S.X.	H.G.	Please select
0.60	81.0	TaAffx.3664.1.S1_at	CD876496	-	-	2e+0	At2g47710	universal stress protein (USP) family protein	S.X.	H.G.	Please select
0.57	79.2	TaAffx.73323.1.S1_at	CA713945	-	-	3e+0	At5g45870	Bet v I allergen family protein	S.X.	H.G.	Please select
0.50	72.4	TaAffx.118620.1.S1_at	BJ316617	-	-	1e+0	At2g31560	unknown protein	S.X.	H.G.	Please select
0.40	58.4	TaAffx.55653.1.S1_at	CA663094	-	-	1e+1	At4g20030	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.0	99.4	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.7	99.2	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.7	99.1	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.3	99.0	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
8.6	98.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.6	98.7	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.8	98.4	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.6	97.8	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.4	96.8	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	1e-169	595	TaAffx.115939.1.S1_at	CD492152	-	-	6e-5	At4g36350	PAP25 (PURPLE ACID PHOSPHATASE 25)	C.G.	S.X.	Please select
0.09	7e-5	48	TaAffx.114457.1.S1_at	CA592900	-	-	9e-1	At5g03350	legume lectin family protein	C.G.	S.X.	Please select
0.03	1e-3	44	Ta.9092.1.S1_at	CA619819	-	-	2e+0	At3g16570	RALFL23 (ralf-like 23)	C.G.	S.X.	Please select
0.04	2e-2	40	TaAffx.53587.2.S1_at	CA697989	-	-	7e-2	At4g34290	SWIB complex BAF60b domain-containing protein	C.G.	S.X.	Please select
0.02	2e-2	40	Ta.14442.1.S1_at	CK170791	-	-	2e-5	At1g08970	NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9)	C.G.	S.X.	Please select
0.03	7e-2	38	TaAffx.128643.5.S1_at	CK212495	-	-	7e+0	At2g15680	calmodulin-related protein, putative	C.G.	S.X.	Please select
0.02	7e-2	38	Ta.6282.1.S1_a_at	BJ249264	-	-	1e-4	At5g53480	importin beta-2, putative	C.G.	S.X.	Please select
0.02	7e-2	38	Ta.6282.1.S1_at	BJ249264	-	-	1e-4	At5g53480	importin beta-2, putative	C.G.	S.X.	Please select
0.01	7e-2	38	Ta.28932.1.S1_at	AF532601.1	multidrug resistance associated protein MRP2	-	2e-7	At3g13080	ATMRP3	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e-2	38	Arabidopsis thaliana	At1g30800	839962	-	F:molecular_function unknown;P:unknown;C:anchored to membrane;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	PsAffx.C208000018_at	PsAffx.C208000018	-	-	2e+0	At4g23890	unknown protein	C.G.	S.X.	Please select
0.26	2e-108	391	Hordeum vulgare	Contig7098_at	Contig7098	-	-	1e-2	At1g56360	PAP6 (PURPLE ACID PHOSPHATASE 6)	C.G.	S.X.	Please select
0.16	2e-56	220	Oryza sativa	Os12g0637100	AB066561.1	-	Purple acid phosphatase (EC 3.1.3.2)	2e-7	At4g36350	PAP25 (PURPLE ACID PHOSPHATASE 25)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.161704.1.S1_at	CK104164	-	-	4e-1	At5g57120	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	30	Vitis vinifera	1613848_at	CF568786	-	-	4e-9	At3g55520	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	C.G.	S.X.	Please select
0.04	3e-2	38	Zea mays	Zm.13485.1.A1_at	AY108893.1	-	-	3e-1	At5g16540	ZFN3 (ZINC FINGER NUCLEASE 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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