Gene omics information

Query gene ID	TaAffx.114398.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	TaAffx.114398.1.S1_at	CA593807	-	-	6e-1	At1g26670	VTI1B	S.X.	H.G.	Please select
0.43	62.2	TaAffx.57873.1.S1_x_at	CA624322	-	-	1e+1	At4g01935	unknown protein	S.X.	H.G.	Please select
0.25	32.1	TaAffx.113263.11.S1_at	CA601426	-	-	5e-6	At5g65360	histone H3	S.X.	H.G.	Please select
0.09	10.4	Ta.1960.1.S1_at	BG604531	-	-	9e-15	At1g73350	unknown protein	S.X.	H.G.	Please select
0.08	9.4	TaAffx.79226.1.S1_at	CA719465	-	-	4e-3	At5g59690	histone H4	S.X.	H.G.	Please select
0.01	2.4	Ta.3544.3.S1_x_at	BQ169086	-	-	4e-10	At1g76860	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.0	99.6	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
12.4	99.4	GSM298083	Crown tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
11.1	99.3	GSM298063	Crown tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
9.6	99.1	GSM298073	Crown tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
7.4	98.6	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.8	98.4	GSM298093	Crown tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.4	98.2	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
5.0	97.4	GSM298064	Crown tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM298074	Crown tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.4	96.8	GSM298088	Crown tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	5e-26	117	Ta.27192.1.S1_at	D38088.1	protein H2A	-	3e-9	At1g08880	H2AXA	C.G.	S.X.	Please select
0.15	5e-26	117	Ta.27192.1.S1_s_at	D38088.1	protein H2A	-	3e-9	At1g08880	H2AXA	C.G.	S.X.	Please select
0.20	8e-25	113	Ta.27657.7.S1_x_at	BJ306445	Protein H2A	-	1e-7	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.21	8e-25	113	Ta.27657.14.S1_x_at	BJ310437	-	-	7e-9	At1g08880	H2AXA	C.G.	S.X.	Please select
0.21	8e-25	113	Ta.27657.14.S1_s_at	BJ310437	Protein H2A	-	7e-9	At1g08880	H2AXA	C.G.	S.X.	Please select
0.22	5e-23	107	Ta.27657.9.S1_x_at	BJ308450	-	-	2e-12	At1g08880	H2AXA	C.G.	S.X.	Please select
0.22	5e-23	107	Ta.27657.9.S1_at	BJ308450	-	-	2e-12	At1g08880	H2AXA	C.G.	S.X.	Please select
0.22	2e-22	105	Ta.27657.1.S1_at	D38090.1	protein H2A	-	4e-13	At1g08880	H2AXA	C.G.	S.X.	Please select
0.20	1e-20	99	Ta.27657.12.S1_at	CD869995	Protein H2A /// Protein H2A	-	3e-8	At1g08880	H2AXA	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	6e-1	34	Arabidopsis thaliana	At1g26670	839208	VTI1B	member of VTI1 Gene Family. Normally localizes to the transgolgi network and plasma membrane. A dominant mutation (zip1) alters the subcellular localization of VTI12 and suppresses loss of function mutation (zag1) of VTI11. Interacts with members of the SYP family. Involved in protein trafficking to protein storage vacuoles.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	9e-1	34	Glycine max	Gma.16073.1.S1_at	CD395530	-	-	5e-28	At1g51060	HTA10	C.G.	S.X.	Please select
0.25	3e-26	117	Hordeum vulgare	Contig167_x_at	Contig167	-	-	2e-8	At1g08880	H2AXA	C.G.	S.X.	Please select
0.22	9e-17	87	Oryza sativa	Os07g0560100	9635.m03701	-	-	2e+0	At3g60530	zinc finger (GATA type) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	8e-1	34	Populus trichocarpa	PtpAffx.3473.1.A1_at	DN489624	hypothetical protein	-	2e-1	At1g03650	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	30	Vitis vinifera	1614741_at	CB969584	hypothetical protein LOC100254527	-	1e-3	At2g20900	diacylglycerol kinase, putative	C.G.	S.X.	Please select
0.17	2e-11	67	Zea mays	Zm.14706.1.S1_at	AY103710.1	-	-	2e-3	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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