CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID TaAffx.113604.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.97 99.6 TaAffx.113604.1.S1_at CA608738 - - 3e-1 At1g65490 unknown protein S.X. H.G.
0.69 86.9 Ta.8852.1.A1_at BQ162511 - - 1e+1 At5g47830 unknown protein S.X. H.G.
0.69 86.9 Ta.19162.1.S1_at CA648099 - - 1e+0 At5g43410 ethylene-responsive factor, putative S.X. H.G.
0.60 81.0 Ta.8788.2.S1_at CA651691 - - 4e-1 At2g43280 far-red impaired responsive family protein / FAR1 family protein S.X. H.G.
0.60 81.0 Ta.18787.1.S1_at CA642169 - - 2e-1 At1g10470 ARR4 (RESPONSE REGULATOR 4) S.X. H.G.
0.54 75.5 Ta.19622.1.S1_at CA654295 - - 1e-5 At1g66470 basic helix-loop-helix (bHLH) family protein S.X. H.G.
0.51 73.0 TaAffx.32029.1.S1_at CA602639 - - 4e+0 At2g03640 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein S.X. H.G.
0.51 73.0 Ta.989.2.S1_x_at CA697991 - - 4e+0 At3g55600 - S.X. H.G.
0.50 72.4 Ta.14333.1.A1_at BU100649 - - 5e+0 At5g06890 - S.X. H.G.
0.49 69.7 Ta.14132.1.S1_x_at BQ803864 - - 5e-3 At5g54500 FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
59.6 99.9 GSM314254 tissue type: germinating seed, root - rep1 GSE12508 Transcription patterns during wheat development
38.4 99.9 GSM314256 tissue type: germinating seed, root - rep3 GSE12508 Transcription patterns during wheat development
27.3 99.8 GSM314260 tissue type: seedling, root - rep1 GSE12508 Transcription patterns during wheat development
23.9 99.8 GSM314262 tissue type: seedling, root - rep3 GSE12508 Transcription patterns during wheat development
22.5 99.8 GSM314255 tissue type: germinating seed, root - rep2 GSE12508 Transcription patterns during wheat development
14.8 99.5 GSM314261 tissue type: seedling, root - rep2 GSE12508 Transcription patterns during wheat development
12.3 99.4 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
9.1 99.0 GSM298069 Leaf tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
6.7 98.4 GSM250907 Tc_7dpi_mock_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.1 98.1 GSM314258 tissue type: germinating seed, embryo - rep2 GSE12508 Transcription patterns during wheat development
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 5e-9 61 TaAffx.59859.1.S1_at CA594375 - - 2e-17 At3g19300 protein kinase family protein C.G. S.X.
0.03 5e-6 52 TaAffx.120936.1.S1_at BJ307684 - - 1e-25 At5g65700 BAM1 (BARELY ANY MERISTEM 1) C.G. S.X.
0.07 5e-6 52 Ta.25419.1.S1_a_at CD490505 - - 4e-4 At5g02070 protein kinase-related C.G. S.X.
0.09 5e-6 52 Ta.19023.1.S1_at CA609435 - - 4e+0 At1g65490 unknown protein C.G. S.X.
0.06 2e-5 50 Ta.18480.1.S1_x_at CA615853 - - 3e-1 At5g07520 GRP18 (GLYCINE-RICH PROTEIN 18) C.G. S.X.
0.06 3e-4 46 TaAffx.26821.1.S1_at CA684420 - - 1e+0 At5g07520 GRP18 (GLYCINE-RICH PROTEIN 18) C.G. S.X.
0.04 3e-4 46 Ta.7511.1.S1_at CA652130 - - 2e-10 At1g79620 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.07 3e-4 46 Ta.30723.1.S1_at CA667557 - - 3e-4 At1g48210 serine/threonine protein kinase, putative C.G. S.X.
0.09 5e-3 42 TaAffx.84014.1.S1_at CA646297 - - 7e-2 At5g47070 protein kinase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e-1 36 Arabidopsis thaliana At1g65490 842861 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P - - - C.G. S.X.
0.05 1e-1 38 Glycine max GmaAffx.92535.1.S1_at CF808260 - - 6e-2 At1g26970 protein kinase, putative C.G. S.X.
0.10 1e-14 79 Hordeum vulgare Contig10767_at Contig10767 - - 3e-15 At3g49670 BAM2 (BARELY ANY MERISTEM 2) C.G. S.X.
0.14 2e-80 299 Oryza sativa Os03g0145000 9631.m00434 - Protein kinase domain containing protein 1e-4 At4g28650 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.04 1e-1 38 Populus trichocarpa PtpAffx.43425.1.A1_at CV272432 hypothetical protein - 9e-8 At3g19700 IKU2 (HAIKU2) C.G. S.X.
0.05 3e-4 44 Vitis vinifera 1616189_at CF511570 hypothetical protein LOC100260741 - 6e-18 At1g75820 CLV1 (CLAVATA 1) C.G. S.X.
0.11 9e-15 79 Zea mays Zm.1140.1.S1_at BM073428 hypothetical protein LOC100279272 - 4e-14 At3g49670 BAM2 (BARELY ANY MERISTEM 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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