CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID TaAffx.112812.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.2 TaAffx.112812.1.S1_at CA620452 - - 3e+0 At1g22450 COX6B (CYTOCHROME C OXIDASE 6B) S.X. H.G.
0.42 60.9 TaAffx.59111.1.S1_at CA607597 - - 1e+0 At2g31305 INH3 (INHIBITOR-3) S.X. H.G.
0.31 42.7 Ta.8956.1.A1_at BQ162686 - - 3e+0 At3g31350 unknown protein S.X. H.G.
0.30 40.9 Ta.3501.3.A1_at CA658638 - - 3e-1 At5g08330 TCP family transcription factor, putative S.X. H.G.
0.28 39.2 TaAffx.7846.1.S1_at CA647264 - - 2e+1 At5g15670 F-box family protein S.X. H.G.
0.26 33.6 TaAffx.83097.1.S1_at CA662094 - - 7e-2 At1g75950 SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) S.X. H.G.
0.25 32.1 TaAffx.65565.2.S1_at BJ232957 - - 3e-1 At3g04370 PDLP4 (PLASMODESMATA-LOCATED PROTEIN 4) S.X. H.G.
0.24 30.3 TaAffx.105451.1.S1_at CA734135 - - 1e+0 At3g06730 thioredoxin family protein S.X. H.G.
0.23 29.0 Ta.26670.1.A1_at CD491523 - - 9e-20 At4g26850 VTC2 (vitamin c defective 2) S.X. H.G.
0.23 29.0 Ta.24929.2.S1_at CA662680 - - 9e-1 At5g16990 NADP-dependent oxidoreductase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
26.7 99.8 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
13.6 99.5 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
12.1 99.4 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
10.9 99.3 GSM298079 Leaf tissue of Solstice at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
8.8 98.9 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.7 98.7 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.3 98.2 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.9 98.0 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.8 97.2 GSM111233 genotype H8 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
4.4 96.8 GSM298077 Leaf tissue of Solstice at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.37 6e-23 107 TaAffx.31291.1.S1_at CA617751 - - 1e+0 At5g08330 TCP family transcription factor, putative C.G. S.X.
0.10 3e-9 61 Ta.2172.1.S1_at CA638858 - - 2e+0 At1g14150 oxygen evolving enhancer 3 (PsbQ) family protein C.G. S.X.
0.03 3e+0 32 TaAffx.86807.1.S1_at CA600292 - - 4e+0 At5g13140 - C.G. S.X.
0.04 3e+0 32 TaAffx.84597.1.S1_at CA633444 - - 4e+0 At5g04900 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.03 3e+0 32 TaAffx.65565.2.S1_at BJ232957 - - 3e-1 At3g04370 PDLP4 (PLASMODESMATA-LOCATED PROTEIN 4) C.G. S.X.
0.02 3e+0 32 TaAffx.12279.1.S1_at BJ275021 - - 3e-6 At3g28760 - C.G. S.X.
0.01 3e+0 32 Ta.27797.1.S1_at CD865944 - - 3e-7 At1g03280 transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein C.G. S.X.
0.03 1e+1 30 TaAffx.97824.1.S1_at BQ803097 - - 4e+0 At5g05930 guanylyl cyclase-related (GC1) C.G. S.X.
0.03 1e+1 30 TaAffx.83716.1.S1_at CA653245 - - 1e+0 At3g20557 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e+0 32 Arabidopsis thaliana At1g22450 838851 COX6B (CYTOCHROME C OXIDASE 6B) subunit 6b of cytochrome c oxidase - - - C.G. S.X.
0.04 1e+0 34 Glycine max GmaAffx.48849.1.S1_at AW781656 - - 8e-1 At5g36960 unknown protein C.G. S.X.
0.09 2e-9 61 Hordeum vulgare Contig9720_at Contig9720 - - 2e+0 At3g10150 PAP16 (PURPLE ACID PHOSPHATASE 16) C.G. S.X.
0.04 1e-10 67 Oryza sativa Os03g0735300 AK071715.1 - DNA/RNA-binding protein Alba/DUF78 domaincontaining protein 1e-2 At1g27710 glycine-rich protein C.G. S.X.
0.04 4e+0 32 Populus trichocarpa PtpAffx.87159.1.A1_at BP929829 hypothetical protein - 2e-1 At5g47060 senescence-associated protein-related C.G. S.X.
0.03 3e+0 30 Vitis vinifera 1611197_at CA812412 hypothetical protein LOC100259765 - 4e-16 At1g78895 - C.G. S.X.
0.69 0 642 Zea mays Zm.6453.1.S1_at AY106427.1 - - 3e-1 At5g33390 glycine-rich protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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