Gene omics information

Query gene ID	TaAffx.111776.1.S1_x_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.79	91.3	TaAffx.111776.1.S1_x_at	CA633994	-	-	9e-1	At5g16650	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.55	76.8	TaAffx.113489.3.S1_at	CA692052	-	-	4e+0	At3g52561	unknown protein	S.X.	H.G.	Please select
0.55	76.8	Ta.7147.3.S1_a_at	BJ315882	-	-	5e-3	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	S.X.	H.G.	Please select
0.54	75.5	Ta.11338.1.S1_at	BQ169872	-	-	3e+0	At4g08593	unknown protein	S.X.	H.G.	Please select
0.53	74.9	TaAffx.27727.1.S1_at	CA671744	-	-	4e+0	At4g19350	EMB3006 (embryo defective 3006)	S.X.	H.G.	Please select
0.51	73.0	Ta.28719.1.A1_at	CA722261	-	-	1e+0	At5g61890	AP2 domain-containing transcription factor family protein	S.X.	H.G.	Please select
0.50	72.4	Ta.7147.3.S1_x_at	BJ315882	-	-	5e-3	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	S.X.	H.G.	Please select
0.49	69.7	Ta.3239.2.A1_a_at	CA641606	-	-	4e+0	At4g09775	-	S.X.	H.G.	Please select
0.49	69.7	Ta.5228.2.A1_a_at	BJ283864	-	-	2e+1	At5g38050	unknown protein	S.X.	H.G.	Please select
0.48	69.0	Ta.7147.2.S1_at	CK161455	-	-	9e-9	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.0	99.5	GSM143507	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
9.2	99.0	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
8.6	98.9	GSM143505	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
8.2	98.8	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.9	98.7	GSM143518	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.7	98.7	GSM143520	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
6.9	98.4	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
6.7	98.4	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
6.7	98.4	GSM143522	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
6.1	98.1	GSM143516	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.69	2e-97	355	Ta.4905.1.S1_at	BQ166693	-	-	9e-5	At5g16650	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.04	9e-1	34	Ta.30755.3.S1_at	CA716191	-	-	9e-1	At1g12890	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.02	4e+0	32	TaAffx.11787.1.S1_at	CA683860	-	-	4e-12	At2g39670	radical SAM domain-containing protein	C.G.	S.X.	Please select
0.03	4e+0	32	Ta.20602.1.S1_at	CA486438	-	-	6e-6	At1g31330	PSAF (photosystem I subunit F)	C.G.	S.X.	Please select
0.03	1e+1	30	TaAffx.94091.1.S1_at	BG905494	-	-	1e+1	At5g15210	ATHB30 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 30)	C.G.	S.X.	Please select
0.03	1e+1	30	TaAffx.78510.1.S1_at	CA731549	-	-	3e-1	At5g63150	unknown protein	C.G.	S.X.	Please select
0.03	1e+1	30	TaAffx.52141.1.S1_at	CA712399	-	-	1e+0	At2g43530	trypsin inhibitor, putative	C.G.	S.X.	Please select
0.03	1e+1	30	TaAffx.32089.1.S1_at	CA601181	-	-	1e+0	At4g10970	unknown protein	C.G.	S.X.	Please select
0.03	1e+1	30	TaAffx.105487.1.S1_at	CA733562	-	-	1e+0	At3g53235	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	9e-1	34	Arabidopsis thaliana	At5g16650	831527	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	Gma.11288.1.S1_at	CA802726	-	-	2e-2	At2g39510	nodulin MtN21 family protein	C.G.	S.X.	Please select
0.44	9e-55	212	Hordeum vulgare	Contig13883_at	Contig13883	-	-	2e+0	At3g17140	invertase inhibitor-related	C.G.	S.X.	Please select
0.16	6e-28	125	Oryza sativa	Os02g0693200	AK071581.1	-	DnaJ homolog subfamily B member 5 (Heat shockprotein Hsp40-3) (Heat shock protein cognate 40) (Hsc40)(Hsp40-2)	2e+0	At3g44428	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Populus trichocarpa	Ptp.5185.1.S1_s_at	BU897435	hypothetical protein	-	1e+0	At4g09090	glycosyl hydrolase family protein 17	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	30	Vitis vinifera	1610059_at	CB342380	hypothetical protein LOC100265578	-	3e-1	At1g08630	THA1 (Threonine Aldolase 1)	C.G.	S.X.	Please select
0.03	2e+1	28	Zea mays	Zm.9360.1.A1_at	BM339459	-	-	5e+0	At5g38310	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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