Gene omics information

Query gene ID	TaAffx.111311.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	93.4	TaAffx.111311.1.S1_at	CA643595	-	-	1e+0	At1g61940	AtTLP4 (TUBBY LIKE PROTEIN 4)	S.X.	H.G.	Please select
0.73	89.1	TaAffx.65688.1.S1_x_at	BJ232502	-	-	2e+1	At3g02480	ABA-responsive protein-related	S.X.	H.G.	Please select
0.67	86.3	TaAffx.78822.1.S1_at	CA726823	-	-	1e+0	At5g01075	beta-galactosidase	S.X.	H.G.	Please select
0.50	72.4	TaAffx.23743.1.S1_at	CA731059	-	-	3e-1	At2g28790	osmotin-like protein, putative	S.X.	H.G.	Please select
0.50	72.4	TaAffx.61664.1.S1_at	CA629036	-	-	2e-1	At1g59171	ATP binding / inositol pentakisphosphate 2-kinase	S.X.	H.G.	Please select
0.16	18.2	TaAffx.55653.1.S1_at	CA663094	-	-	1e+1	At4g20030	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.3	99.8	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
16.4	99.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
12.4	99.4	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.8	99.1	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
9.4	99.1	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
9.1	99.0	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
8.4	98.9	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.1	98.8	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3	97.6	GSM138193	genotype B33 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.0	97.4	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.52	2e-73	276	Ta.7811.1.A1_a_at	BU101273	-	-	1e+0	At5g40370	glutaredoxin, putative	C.G.	S.X.	Please select
0.52	2e-73	276	Ta.7811.1.A1_x_at	BU101273	-	-	1e+0	At5g40370	glutaredoxin, putative	C.G.	S.X.	Please select
0.55	6e-67	254	Ta.7811.2.A1_x_at	BQ160724	-	-	1e+0	At5g40370	glutaredoxin, putative	C.G.	S.X.	Please select
0.42	2e-36	153	Ta.11800.1.A1_at	BQ170828	-	-	3e+0	At1g74640	unknown protein	C.G.	S.X.	Please select
0.03	7e-2	38	TaAffx.105701.1.S1_at	CN013133	-	-	8e+0	At4g32490	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.03	7e-2	38	TaAffx.105701.1.S1_x_at	CN013133	-	-	8e+0	At4g32490	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.04	3e-1	36	TaAffx.53680.1.S1_s_at	CA690163	-	-	4e+0	At3g06360	AGP27	C.G.	S.X.	Please select
0.04	3e-1	36	TaAffx.24604.1.S1_at	CA716201	-	-	1e+1	At5g41860	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Ta.6992.1.S1_a_at	BQ609424	-	-	9e+0	At4g09030	AGP10 (ARABINOGALACTAN PROTEIN 10)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At1g61940	842489	AtTLP4 (TUBBY LIKE PROTEIN 4)	Member of TLP family	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	PsAffx.psMC011xE06f_at	PsAffx.psMC011xE06f	-	-	9e+0	At3g46380	unknown protein	C.G.	S.X.	Please select
0.63	5e-143	506	Hordeum vulgare	Contig13864_at	Contig13864	-	-	9e-2	At3g60590	unknown protein	C.G.	S.X.	Please select
0.30	7e-31	135	Oryza sativa	Os03g0646400	AK108306.1	-	Conserved hypothetical protein	1e+0	At3g19980	ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e+0	32	Populus trichocarpa	PtpAffx.216999.1.S1_s_at	pmrna32097	hypothetical protein	-	7e-1	At2g46910	plastid-lipid associated protein PAP / fibrillin family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	30	Vitis vinifera	1615918_at	CD797632	hypothetical protein LOC100247805	-	3e+0	At5g19050	unknown protein	C.G.	S.X.	Please select
0.29	1e-50	198	Zea mays	Zm.5417.1.A1_at	CA403570	hypothetical protein LOC100193358	-	2e+0	At2g20100	ethylene-responsive family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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