Gene omics information

Query gene ID	TaAffx.110693.2.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.96	99.3	TaAffx.110693.2.S1_at	CA655890	-	-	7e-2	At1g61255	-	S.X.	H.G.	Please select
0.59	79.8	TaAffx.6303.1.S1_x_at	CA688541	-	-	6e-5	At1g80820	CCR2 (CINNAMOYL COA REDUCTASE)	S.X.	H.G.	Please select
0.57	79.2	Ta.25602.2.S1_x_at	CA694393	-	-	1e+0	At2g14910	unknown protein	S.X.	H.G.	Please select
0.54	75.5	Ta.8765.1.A1_x_at	BQ162344	-	-	3e+0	At3g03405	-	S.X.	H.G.	Please select
0.54	75.5	TaAffx.55725.1.S1_at	CA662141	-	-	4e+0	At3g11780	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	S.X.	H.G.	Please select
0.53	74.9	Ta.15206.1.S1_at	CA693469	-	-	3e-1	At2g22320	unknown protein	S.X.	H.G.	Please select
0.52	73.7	TaAffx.52614.1.S1_at	CA704641	-	-	1e+1	At3g58450	universal stress protein (USP) family protein	S.X.	H.G.	Please select
0.49	69.7	TaAffx.105889.1.S1_s_at	CA728431	-	-	1e+0	At3g61260	DNA-binding family protein / remorin family protein	S.X.	H.G.	Please select
0.49	69.7	Ta.8195.2.S1_at	CD875760	-	-	2e-6	At1g68010	HPR	S.X.	H.G.	Please select
0.47	67.9	Ta.10327.2.S1_a_at	CA723265	-	-	3e+0	At2g04550	IBR5 (INDOLE-3-BUTYRIC ACID RESPONSE 5)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.2	99.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
26.1	99.8	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
19.8	99.7	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
14.4	99.5	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.5	98.9	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.6	98.7	GSM324495	Si+ B+ rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.6	98.7	GSM298068	Leaf tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.5	98.6	GSM298055	Leaf tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
7.5	98.6	GSM246396	SB57_Stem_ rep1_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
5.8	97.9	GSM143525	Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.78	6e-138	490	TaAffx.110693.1.S1_x_at	CA655191	-	-	4e+0	At5g50250	31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative	C.G.	S.X.	Please select
0.78	6e-138	490	TaAffx.110693.1.S1_s_at	CA655191	-	-	4e+0	At5g50250	31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative	C.G.	S.X.	Please select
0.45	2e-137	488	Ta.13372.1.S1_at	BQ578706	-	-	1e-5	At5g38520	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select
0.03	1e-3	44	TaAffx.38492.1.S1_at	BJ228093	-	-	2e+0	At5g19910	SOH1 family protein	C.G.	S.X.	Please select
0.04	1e-3	44	Ta.9285.3.S1_x_at	CA722959	-	-	9e-1	At5g60840	unknown protein	C.G.	S.X.	Please select
0.03	1e-3	44	Ta.20944.1.S1_at	CA613580	-	-	2e+0	At5g55570	unknown protein	C.G.	S.X.	Please select
0.05	1e-3	44	Ta.18735.1.S1_at	CA641420	-	-	3e+0	At1g29520	AWPM-19-like membrane family protein	C.G.	S.X.	Please select
0.04	5e-3	42	TaAffx.30652.1.S1_at	CA623146	-	-	3e-4	At2g30260	U2B'' (U2 small nuclear ribonucleoprotein B)	C.G.	S.X.	Please select
0.02	5e-3	42	TaAffx.129082.1.S1_x_at	CK154420	-	-	3e-6	At5g64460	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	7e-2	38	Arabidopsis thaliana	At1g61255	842419	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	2e-2	40	Glycine max	GmaAffx.83089.1.S1_at	CA801535	-	-	3e-1	At5g25490	zinc finger (Ran-binding) family protein	C.G.	S.X.	Please select
0.26	2e-59	228	Hordeum vulgare	Contig17849_at	Contig17849	-	-	3e-8	At5g38520	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select
0.18	3e-27	123	Oryza sativa	Os05g0419000	AK067277.1	-	Alpha/beta hydrolase family protein	2e-1	At5g38520	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-1	38	Populus trichocarpa	PtpAffx.218717.1.S1_at	pmrna34439	-	-	7e-1	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	8e-2	36	Vitis vinifera	1612884_at	CA810969	-	-	4e+0	At3g24513	-	C.G.	S.X.	Please select
0.04	8e-3	40	Zea mays	ZmAffx.799.1.A1_at	AI770347	-	-	5e-2	At1g75080	BZR1 (BRASSINAZOLE-RESISTANT 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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