CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID TaAffx.110167.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.2 TaAffx.110167.1.S1_at CA662870 - - 4e+0 At4g14440 HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1) S.X. H.G.
0.67 86.3 TaAffx.119081.1.S1_at BJ291857 - - 2e+1 At5g45700 NLI interacting factor (NIF) family protein S.X. H.G.
0.50 72.4 TaAffx.82721.1.S1_at CA668034 - - 3e+1 At4g20780 calcium-binding protein, putative S.X. H.G.
0.40 58.4 TaAffx.85941.1.S1_at CA618291 - - 2e+1 At5g23760 heavy-metal-associated domain-containing protein S.X. H.G.
0.40 58.4 Ta.3911.2.S1_s_at CA604151 - - 4e+0 At2g44290 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3) S.X. H.G.
0.33 46.9 TaAffx.3664.1.S1_at CD876496 - - 2e+0 At2g47710 universal stress protein (USP) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.4 99.7 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
15.7 99.6 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
11.7 99.3 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
9.6 99.1 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.2 98.8 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.3 98.6 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.2 98.5 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.9 98.4 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.6 98.3 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
6.4 98.2 GSM298069 Leaf tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-1 36 TaAffx.80269.1.S1_at CA699199 - - 2e-1 At1g30130 unknown protein C.G. S.X.
0.04 3e-1 36 TaAffx.110316.1.S1_at CA660556 - - 4e+0 At2g45210 auxin-responsive protein-related C.G. S.X.
0.02 3e-1 36 Ta.798.1.S1_x_at CK213160 - - 1e-23 At5g09650 AtPPa6 (Arabidopsis thaliana pyrophosphorylase 6) C.G. S.X.
0.03 1e+0 34 TaAffx.77841.1.S1_at CA741920 - - 4e+0 At3g07860 unknown protein C.G. S.X.
0.03 1e+0 34 TaAffx.130636.1.S1_at CK204104 - - 7e+0 At4g24930 thylakoid lumenal 17.9 kDa protein, chloroplast C.G. S.X.
0.02 1e+0 34 Ta.6577.1.A1_at CK156199 - - 7e+0 At5g53420 - C.G. S.X.
0.03 1e+0 34 Ta.6577.2.A1_at CA679611 - - 4e+0 At3g07860 unknown protein C.G. S.X.
0.03 1e+0 34 Ta.6577.2.A1_x_at CA679611 - - 4e+0 At3g07860 unknown protein C.G. S.X.
0.03 1e+0 34 Ta.5893.1.S1_s_at BJ291629 - - 4e+0 At4g24930 thylakoid lumenal 17.9 kDa protein, chloroplast C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e+0 32 Arabidopsis thaliana At4g14440 827089 HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1) encodes a cytosolic delta3, delta2-enoyl CoA isomerase, involved in unsaturated fatty acid degradation - - - C.G. S.X.
0.04 2e-2 40 Glycine max PsAffx.psML002xE22f_at PsAffx.psML002xE22f - - 9e-1 At3g15250 unknown protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare HVSMEi0003L08r2_at HVSMEi0003L08r2 - - 1e+1 At5g48240 unknown protein C.G. S.X.
0.48 5e-41 169 Oryza sativa Os.15870.1.S1_s_at - - - 0 C.G. S.X.
0.04 5e+0 32 Populus trichocarpa PtpAffx.216330.1.S1_at pmrna31041 hypothetical protein - 3e+0 At5g26840 unknown protein C.G. S.X.
0.03 2e+1 28 Vitis vinifera 1616428_at CB345762 - - 4e+0 At1g21900 emp24/gp25L/p24 family protein C.G. S.X.
0.04 3e-2 38 Zea mays Zm.1448.1.A1_at CF634321 - - 2e+0 At3g32930 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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