CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID TaAffx.108876.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 72.4 TaAffx.108876.1.S1_at CA684367 - - 2e+0 At4g05350 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.67 86.3 TaAffx.54536.1.S1_x_at CA680299 - - 2e-1 At2g38340 AP2 domain-containing transcription factor, putative (DRE2B) S.X. H.G.
0.56 78.6 Ta.22731.3.S1_at CA697465 - - 2e+1 At4g17440 unknown protein S.X. H.G.
0.50 72.4 TaAffx.110040.1.S1_at CA664997 - - 4e+0 At5g05830 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.44 64.5 Ta.3564.3.S1_x_at CA699601 - - 3e-2 At4g16770 iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors S.X. H.G.
0.36 51.9 TaAffx.105929.1.S1_at BJ226774 - - 4e+0 At5g19875 unknown protein S.X. H.G.
0.27 35.6 Ta.29509.2.S1_x_at CA698053 - - 2e-5 At1g63960 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.6 99.5 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
12.4 99.4 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.2 99.0 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.9 99.0 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.5 98.3 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.0 97.4 GSM324492 Si+ B- rep3 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.0 97.4 GSM250908 Tc_7dpi_inoculated_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6 97.0 GSM298079 Leaf tissue of Solstice at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.5 96.9 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4 96.8 GSM143520 Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.36 5e-28 125 Ta.25888.1.S1_at CD873606 - - 7e-1 At1g72970 HTH (HOTHEAD) C.G. S.X.
0.15 2e-18 93 TaAffx.30033.2.S1_at CA630062 - - 1e+1 At5g50820 anac097 (Arabidopsis NAC domain containing protein 97) C.G. S.X.
0.35 8e-18 91 Ta.10299.1.S1_at BJ251272 - - 9e+0 At5g23550 - C.G. S.X.
0.06 2e-3 44 Ta.16869.1.S1_at BJ273714 - - 2e-5 At4g02860 catalytic C.G. S.X.
0.14 6e-3 42 Ta.10299.2.S1_a_at BJ293297 - - 1e+1 At5g51440 23.5 kDa mitochondrial small heat shock protein (HSP23.5-M) C.G. S.X.
0.03 4e-1 36 Ta.1208.1.S1_at BE419896 - - 3e-1 At1g26799 - C.G. S.X.
0.03 2e+0 34 TaAffx.9532.1.S1_at CA596838 - - 2e+1 At2g40233 unknown protein C.G. S.X.
0.02 2e+0 34 TaAffx.94825.1.S1_at BJ288944 retinoblastoma-related protein 1 - 2e+0 At3g63330 protein kinase family protein C.G. S.X.
0.04 2e+0 34 TaAffx.78352.1.S1_at CA733749 - - 4e-2 At5g54170 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Arabidopsis thaliana At4g05350 825883 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB - - - C.G. S.X.
0.02 2e+0 34 Glycine max PsAffx.C333000006_at PsAffx.C333000006 - - 2e-1 At1g17700 PRA1.F1 (PRENYLATED RAB ACCEPTOR 1.F1) C.G. S.X.
0.63 0 900 Hordeum vulgare Contig9255_at Contig9255 - - 3e+0 At3g47620 AtTCP14 (TEOSINTE BRANCHED1, CYCLOIDEA and PCF (TCP) 14) C.G. S.X.
0.39 1e-17 91 Oryza sativa Os01g0266500 AK101084.1 - Phenazine biosynthesis PhzC/PhzF protein familyprotein 9e+0 At5g55570 unknown protein C.G. S.X.
0.03 8e+0 32 Populus trichocarpa PtpAffx.213177.1.S1_s_at pmrna25777 hypothetical protein - 9e-1 At5g57760 unknown protein C.G. S.X.
0.03 3e+1 28 Vitis vinifera 1621618_at CB344828 similar to NADH dehydrogenase subunit I /// similar to NADH dehydrogenase subunit I - 3e-29 Atcg01100 - C.G. S.X.
0.38 2e-28 125 Zea mays Zm.8760.1.S1_at CK827613 phenazine biosynthesis protein - 7e-4 At4g02860 catalytic C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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