Gene omics information

Query gene ID	TaAffx.108775.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	TaAffx.108775.1.S1_at	CA684251	-	-	3e+0	At5g47570	unknown protein	S.X.	H.G.	Please select
0.61	82.0	TaAffx.80668.1.S1_at	CA694164	-	-	1e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	S.X.	H.G.	Please select
0.50	72.4	TaAffx.99206.1.S1_at	CA727631	-	-	3e-1	At4g21610	LOL2 (LSD ONE LIKE 2)	S.X.	H.G.	Please select
0.50	72.4	Ta.11314.2.S1_x_at	CA619157	-	-	4e+0	At5g40500	unknown protein	S.X.	H.G.	Please select
0.29	39.2	TaAffx.113756.1.S1_at	CA605644	-	-	1e-3	At5g04250	OTU-like cysteine protease family protein	S.X.	H.G.	Please select
0.22	27.1	TaAffx.66587.1.S1_at	BG909343	-	-	2e+0	At1g02620	GTP-binding protein (SAR1A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.6	99.5	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.8	99.2	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.7	99.1	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.0	98.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.9	98.4	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.7	98.4	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.1	98.1	GSM250894	TcLr34_3dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.1	98.1	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.7	97.9	GSM298078	Leaf tissue of Solstice at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.5	97.8	GSM298068	Leaf tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-2	38	Ta.14533.1.S1_at	BJ269429	-	-	2e+0	At3g57390	AGL18	C.G.	S.X.	Please select
0.04	5e-2	38	Ta.14533.2.S1_a_at	CA635464	-	-	4e+0	At5g47870	unknown protein	C.G.	S.X.	Please select
0.04	5e-2	38	Ta.14533.2.S1_x_at	CA635464	-	-	4e+0	At5g47870	unknown protein	C.G.	S.X.	Please select
0.05	2e-1	36	TaAffx.92064.1.S1_at	BJ282294	-	-	1e-1	At4g27540	PRA1.H (PRENYLATED RAB ACCEPTOR 1.H)	C.G.	S.X.	Please select
0.04	2e-1	36	TaAffx.85128.1.S1_at	CA625372	-	-	7e-11	At1g62040	ATG8C (autophagy 8c)	C.G.	S.X.	Please select
0.04	2e-1	36	TaAffx.117195.1.S1_at	BQ608626	-	-	1e+0	At4g27150	2S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2	C.G.	S.X.	Please select
0.05	2e-1	36	Ta.8517.1.S1_at	BQ162006	-	-	4e+0	At2g43371	unknown protein	C.G.	S.X.	Please select
0.02	8e-1	34	Ta.792.1.S1_at	BE423469	-	-	7e-1	At5g38610	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.02	8e-1	34	Ta.7470.1.S1_at	CK200781	-	-	3e-3	At5g07250	ATRBL3 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+0	32	Arabidopsis thaliana	At5g47570	834807	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:respiratory chain complex I;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-1	36	Glycine max	PsAffx.psHB018xJ22f_at	PsAffx.psHB018xJ22f	-	-	4e+0	At1g15800	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Hordeum vulgare	Contig19506_at	Contig19506	-	-	1e-3	At5g27880	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.10	7e-18	91	Oryza sativa	Os04g0652500	9632.m05433	-	Conserved hypothetical protein	3e+0	At3g21175	ZML1 (ZIM-LIKE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e+0	34	Populus trichocarpa	PtpAffx.204878.1.S1_at	pmrna9641	NAC domain protein, IPR003441	-	1e-2	At5g63790	ANAC102 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 102)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	3e+0	30	Vitis vinifera	1612484_at	CF510569	hypothetical protein LOC100254359 /// hypothetical protein LOC100267643	-	7e-8	At5g10470	kinesin motor protein-related	C.G.	S.X.	Please select
0.03	3e-1	34	Zea mays	Zm.2591.3.A1_x_at	CF003515	autophagy-related 8b	-	3e-48	At1g62040	ATG8C (autophagy 8c)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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