CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID TaAffx.108556.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 93.4 TaAffx.108556.1.S1_at CA692789 - - 2e-2 At3g04720 PR4 (PATHOGENESIS-RELATED 4) S.X. H.G.
0.91 98.2 Ta.28.1.S1_at Y18212.1 glucan endo-1,3-beta-D-glucosidase - 6e-1 At3g23360 protein phosphatase 2C, putative / PP2C, putative S.X. H.G.
0.91 98.2 Ta.30501.1.S1_at CK205943 - - 2e-3 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) S.X. H.G.
0.91 98.2 TaAffx.108556.1.S1_x_at CA692789 - - 1e+0 At3g04720 PR4 (PATHOGENESIS-RELATED 4) S.X. H.G.
0.83 93.4 Ta.224.1.S1_at AF112966.1 chitinase IV precursor - 1e-1 At3g54420 ATEP3 S.X. H.G.
0.77 90.8 TaAffx.15327.1.S1_at AJ610775 Glucan endo-1,3-beta-D-glucosidase - 3e+0 At2g22850 AtbZIP6 (Arabidopsis thaliana basic leucine-zipper 6) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.6 99.8 GSM143506 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
23.4 99.8 GSM143507 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
23.3 99.8 GSM143505 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
20.6 99.7 GSM143518 Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
16.7 99.6 GSM143517 Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
16.5 99.6 GSM143515 Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
14.7 99.5 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
14.6 99.5 GSM143520 Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
14.3 99.5 GSM143502 Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
12.7 99.4 GSM250894 TcLr34_3dpi_inoculated_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.94 0 993 TaAffx.108556.1.S1_x_at CA692789 - - 1e+0 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.54 1e-77 289 TaAffx.116570.1.S1_x_at AL825027 - - 2e-8 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.54 1e-77 289 TaAffx.116570.1.S1_s_at AL825027 - - 2e-8 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.54 1e-77 289 TaAffx.116570.1.S1_at AL825027 - - 2e-8 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.26 1e-44 180 TaAffx.116570.2.S1_at CA684050 - - 2e-4 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.31 8e-27 121 Ta.9226.1.S1_at CD915938 Pathogenesis-related protein 4 - 7e+0 At5g45890 SAG12 (SENESCENCE-ASSOCIATED GENE 12) C.G. S.X.
0.24 1e-16 87 TaAffx.128595.1.S1_at CK216241 - - 6e+0 At5g37250 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.07 2e-6 54 TaAffx.81313.1.S1_at CA687608 - - 2e+1 At5g19150 carbohydrate kinase family C.G. S.X.
0.06 6e-6 52 TaAffx.54294.1.S1_at CA683327 - - 3e-2 At1g58330 ZW2 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-2 40 Arabidopsis thaliana At3g04720 819632 PR4 (PATHOGENESIS-RELATED 4) Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection. - - - C.G. S.X.
0.05 8e-6 52 Glycine max Gma.6314.1.S1_at BQ612856 - - 8e+0 At3g58150 - C.G. S.X.
0.41 2e-72 272 Hordeum vulgare Contig6576_at Contig6576 - - 6e-6 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.19 1e-26 121 Oryza sativa Os11g0592000 AK121059.1 - Barwin 7e-3 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.04 1e-4 48 Populus trichocarpa PtpAffx.5149.2.S1_a_at CV257760 - - 3e-6 At1g79750 ATNADP-ME4 (NADP-malic enzyme 4) C.G. S.X.
0.04 7e-6 50 Vitis vinifera 1613755_at CB975521 hypothetical protein LOC100253264 - 9e-2 At4g04080 ISU3 (ISCU-LIKE 3) C.G. S.X.
0.26 1e-17 89 Zea mays Zm.2227.1.A1_at BM381059 hypothetical protein LOC100191593 - 6e-3 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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