Gene omics information

Query gene ID	TaAffx.108544.1.S1_x_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	TaAffx.108544.1.S1_x_at	CA663841	-	-	1e+1	At4g27270	quinone reductase family protein	S.X.	H.G.	Please select
0.71	88.0	TaAffx.108544.1.S1_at	CA663841	-	-	1e+1	At4g27270	quinone reductase family protein	S.X.	H.G.	Please select
0.67	86.3	TaAffx.64914.1.S1_at	BJ270115	-	-	4e+0	At1g51915	cryptdin protein-related	S.X.	H.G.	Please select
0.46	66.8	Ta.19591.2.A1_a_at	CA651113	-	-	4e+0	At5g11500	unknown protein	S.X.	H.G.	Please select
0.35	49.8	TaAffx.111311.1.S1_at	CA643595	-	-	1e+0	At1g61940	AtTLP4 (TUBBY LIKE PROTEIN 4)	S.X.	H.G.	Please select
0.29	39.2	TaAffx.23743.1.S1_at	CA731059	-	-	3e-1	At2g28790	osmotin-like protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
45.1	99.9	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
17.7	99.7	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
15.2	99.6	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
12.6	99.4	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
8.4	98.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.1	98.8	GSM298089	Leaf tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.6	98.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.3	98.2	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3	97.6	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8	97.2	GSM138205	genotype H8 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	888	TaAffx.108544.1.S1_at	CA663841	-	-	1e+1	At4g27270	quinone reductase family protein	C.G.	S.X.	Please select
0.41	2e-79	295	TaAffx.108544.2.S1_x_at	CA687168	-	-	3e+0	At5g14730	unknown protein	C.G.	S.X.	Please select
0.19	7e-14	77	TaAffx.43242.1.S1_at	BQ802740	-	-	1e+1	At2g38810	HTA8 (HISTONE H2A 8)	C.G.	S.X.	Please select
0.04	1e+0	34	TaAffx.32194.1.S1_at	CA599318	-	-	1e+0	At3g19530	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.110259.1.S1_at	CA661209	-	-	1e+0	At4g31800	WRKY18	C.G.	S.X.	Please select
0.03	1e+0	34	Ta.9018.2.A1_a_at	BJ252992	-	-	1e+0	At2g31720	DNA binding	C.G.	S.X.	Please select
0.03	1e+0	34	Ta.29464.1.A1_at	CK211571	-	-	5e+0	At2g37610	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	34	Ta.25806.1.S1_at	CD374027	-	-	2e+0	At1g64585	RTFL22 (ROTUNDIFOLIA LIKE 22)	C.G.	S.X.	Please select
0.03	1e+0	34	Ta.14525.1.S1_at	BJ253272	-	-	4e-1	At2g36550	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+1	30	Arabidopsis thaliana	At4g27270	828835	quinone reductase family protein	F:oxidoreductase activity, FMN binding;P:negative regulation of transcription;C:plasma membrane;BOFPAMV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.82466.1.S1_at	BM094108	-	-	2e-23	At5g51590	DNA-binding protein-related	C.G.	S.X.	Please select
0.03	4e-1	34	Hordeum vulgare	HVSMEb0004M17r2_at	HVSMEb0004M17r2	-	-	1e+0	Atmg00450	-	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	OsAffx.19819.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-1	36	Populus trichocarpa	PtpAffx.219018.1.S1_at	pmrna34808	hypothetical protein	-	2e+1	At5g48700	ubiquitin-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	30	Vitis vinifera	1617560_s_at	CF202032.1	hypothetical protein LOC100264696	-	6e+0	At5g04250	OTU-like cysteine protease family protein	C.G.	S.X.	Please select
0.03	1e-1	36	Zea mays	Zm.9031.1.S1_at	CD441372	chloroplast Cu-Zn superoxide dismutase	-	8e-37	At2g28190	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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