Gene omics information

Query gene ID	TaAffx.106421.1.S1_at
Gene name	zinc transporter ZIP
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.3	TaAffx.106421.1.S1_at	CD933478	zinc transporter ZIP	-	3e+0	At5g62160	AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)	S.X.	H.G.	Please select
0.67	86.3	Ta.4105.1.S1_at	BJ258955	-	-	1e+0	At2g37470	histone H2B, putative	S.X.	H.G.	Please select
0.61	82.0	TaAffx.23640.1.S1_at	CA732432	-	-	1e+0	At4g31730	GDU1 (GLUTAMINE DUMPER 1)	S.X.	H.G.	Please select
0.35	49.8	Ta.18731.1.S1_a_at	CD491978	-	-	2e+0	At3g60840	MAP65-4 (MICROTUBULE-ASSOCIATED PROTEIN 65-4)	S.X.	H.G.	Please select
0.35	49.8	Ta.8031.1.A1_at	CK193031	-	-	2e+0	At1g58225	unknown protein	S.X.	H.G.	Please select
0.32	44.4	TaAffx.59301.1.S1_at	AJ603987	-	-	6e-1	At5g62250	MAP65-9 (MICROTUBULE-ASSOCIATED PROTEIN 65-9)	S.X.	H.G.	Please select
0.24	30.3	Ta.10358.1.A1_at	BJ320328	-	-	5e-1	At4g26760	MAP65-2	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
68.3	100.0	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
51.0	99.9	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
43.2	99.9	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
12.9	99.4	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
9.6	99.1	GSM314271	tissue type: immature inflorescence - rep3	GSE12508	Transcription patterns during wheat development
8.8	98.9	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.4	98.9	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.9	98.7	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
7.5	98.6	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.2	98.5	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	38	TaAffx.86192.1.S1_at	CA614702	-	-	1e+0	At1g01130	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	36	TaAffx.123572.1.S1_s_at	BE414891	-	-	9e-3	At1g14920	GAI (GIBBERELLIC ACID INSENSITIVE)	C.G.	S.X.	Please select
0.02	7e-1	36	Ta.15537.1.S1_at	CA485614	-	-	1e-16	At3g09820	ADK1 (adenosine kinase 1)	C.G.	S.X.	Please select
0.02	3e+0	34	TaAffx.106678.1.S1_s_at	CA633400	-	-	2e+1	At5g38317	LCR58 (Low-molecular-weight cysteine-rich 58)	C.G.	S.X.	Please select
0.06	3e+0	34	Ta.5200.1.A1_at	BJ285227	-	-	3e-5	At4g19680	IRT2	C.G.	S.X.	Please select
0.02	3e+0	34	Ta.18375.1.S1_at	CA635444	-	-	3e-1	At5g39170	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	34	Ta.18223.2.S1_at	CA676155	-	-	8e-1	At5g18430	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.02	1e+1	32	TaAffx.98332.1.S1_at	BF199924	-	-	8e-1	At4g13050	acyl-(acyl carrier protein) thioesterase, putative / acyl-ACP thioesterase, putative / oleoyl-(acyl-carrier protein) hydrolase, putative / S-acyl fatty acid synthase thioesterase, putative	C.G.	S.X.	Please select
0.02	1e+1	32	TaAffx.91534.1.S1_at	BJ313907	-	-	5e+0	At5g61490	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+0	34	Arabidopsis thaliana	At5g62160	836336	AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)	member of Fe(II) transporter isolog family	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e-2	42	Glycine max	Gma.6141.1.S1_at	BM523097	-	-	2e-18	At1g60960	IRT3	C.G.	S.X.	Please select
0.42	3e-75	282	Hordeum vulgare	Contig26252_at	Contig26252	-	-	1e+0	At4g19680	IRT2	C.G.	S.X.	Please select
0.45	7e-67	256	Oryza sativa	Os04g0613000	AY323915.1	-	Zinc transporter 1 precursor (ZRT/IRT-like protein1)	1e-2	At2g32270	ZIP3	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	2e-1	38	Populus trichocarpa	PtpAffx.209197.1.S1_at	pmrna18189	ZIP transporter	-	5e-1	At5g62160	AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.08	6e-11	67	Vitis vinifera	1618682_at	CA814693	hypothetical protein LOC100255284	-	5e-5	At5g62160	AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)	C.G.	S.X.	Please select
0.02	4e+0	32	Zea mays	Zm.8741.1.A1_at	BM349488	-	-	1e+0	At3g16330	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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