Gene omics information

Query gene ID	TaAffx.105943.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	TaAffx.105943.1.S1_at	CA727514	-	-	2e+1	At5g07470	PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)	S.X.	H.G.	Please select
0.63	83.1	Ta.19591.2.A1_a_at	CA651113	-	-	4e+0	At5g11500	unknown protein	S.X.	H.G.	Please select
0.61	82.0	TaAffx.112440.1.S1_at	CA621396	-	-	4e-1	At3g11050	ATFER2 (ferritin 2)	S.X.	H.G.	Please select
0.61	82.0	TaAffx.105981.1.S1_at	CA727065	-	-	3e-1	At4g11870	unknown protein	S.X.	H.G.	Please select
0.57	79.2	TaAffx.51913.1.S1_x_at	CA716536	-	-	8e-1	At5g56110	ATMYB103 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 103)	S.X.	H.G.	Please select
0.44	64.5	TaAffx.64914.1.S1_at	BJ270115	-	-	4e+0	At1g51915	cryptdin protein-related	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
64.7	99.9	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
31.4	99.9	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
26.9	99.8	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
14.2	99.5	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.1	98.1	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.4	97.7	GSM138193	genotype B33 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.8	97.2	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.7	97.1	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.4	96.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM138210	genotype B65 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	7e-33	141	TaAffx.114248.1.S1_at	CK206245	-	-	7e-3	At3g19680	unknown protein	C.G.	S.X.	Please select
0.05	1e-3	44	TaAffx.29989.1.S1_at	CA631073	-	-	2e+1	At4g35655	-	C.G.	S.X.	Please select
0.04	5e-3	42	Ta.26635.1.A1_at	CD491430	-	-	1e+0	At4g24973	-	C.G.	S.X.	Please select
0.04	7e-2	38	TaAffx.7257.1.S1_at	CA663820	-	-	4e+0	At3g05880	RCI2A (RARE-COLD-INDUCIBLE 2A)	C.G.	S.X.	Please select
0.04	3e-1	36	TaAffx.59843.1.S1_at	CA594547	-	-	9e-1	At1g65000	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	36	TaAffx.32244.1.S1_at	CA598296	-	-	4e+0	At3g55380	UBC14 (ubiquitin-conjugating enzyme 14)	C.G.	S.X.	Please select
0.02	3e-1	36	Ta.42.1.S1_at	AB047554.1	-	-	5e-6	At3g24650	ABI3 (ABA INSENSITIVE 3)	C.G.	S.X.	Please select
0.03	3e-1	36	Ta.10429.2.S1_at	BJ245838	-	-	3e-7	At1g71280	DEAD/DEAH box helicase, putative	C.G.	S.X.	Please select
0.02	1e+0	34	TaAffx.63045.1.S1_at	CA643793	translation initiation factor nCBP	-	2e-15	At5g18110	NCBP (NOVEL CAP-BINDING PROTEIN)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+1	30	Arabidopsis thaliana	At5g07470	830638	PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)	ubiquitous enzyme that repairs oxidatively damaged proteins	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	PsAffx.psMA012xJ18f_at	PsAffx.psMA012xJ18f	-	-	5e-1	At4g39070	zinc finger (B-box type) family protein	C.G.	S.X.	Please select
0.11	1e-26	119	Hordeum vulgare	Contig13740_at	Contig13740	-	-	2e-4	At1g50040	unknown protein	C.G.	S.X.	Please select
0.11	5e-23	109	Oryza sativa	Os07g0133500	AK106244.1	-	Protein of unknown function DUF1005 family protein	4e-3	At5g64905	PROPEP3 (Elicitor peptide 3 precursor)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e+0	32	Populus trichocarpa	PtpAffx.214056.1.S1_at	pmrna27367	hypothetical protein	-	5e-13	At3g14290	PAE2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+1	28	Vitis vinifera	1618236_at	CF210257	hypothetical protein LOC100260911	-	4e-3	At1g50350	-	C.G.	S.X.	Please select
0.14	2e-34	145	Zea mays	Zm.16514.1.S1_at	CO524388	hypothetical protein LOC100273612	-	2e-1	At3g02900	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage