Gene omics information

Query gene ID	TaAffx.105929.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.47	67.9	TaAffx.105929.1.S1_at	BJ226774	-	-	4e+0	At5g19875	unknown protein	S.X.	H.G.	Please select
0.83	93.4	Ta.6666.2.S1_x_at	CA640317	-	-	5e-12	At3g49420	Got1-like family protein	S.X.	H.G.	Please select
0.73	89.1	Ta.5522.2.S1_a_at	CA699425	-	-	1e+0	At2g13150	transcription factor	S.X.	H.G.	Please select
0.67	86.3	Ta.6666.2.S1_at	CA640317	-	-	5e-12	At3g49420	Got1-like family protein	S.X.	H.G.	Please select
0.50	72.4	Ta.6666.3.S1_x_at	CA720211	-	-	4e-3	At3g03180	Got1-like family protein	S.X.	H.G.	Please select
0.27	35.6	TaAffx.32308.1.S1_at	CA597142	-	-	1e+0	At2g19670	PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.3	99.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.5	99.1	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.4	98.9	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.1	98.8	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.8	98.7	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.9	98.4	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.6	95.6	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
3.5	95.4	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.4	95.2	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-3	42	Ta.13913.1.S1_at	BQ743739	-	-	1e+0	At5g43550	-	C.G.	S.X.	Please select
0.03	3e-1	36	Ta.24041.2.A1_x_at	CA722645	-	-	1e+0	At5g47330	palmitoyl protein thioesterase family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Ta.11156.1.S1_at	BQ169519	-	-	7e+0	At4g39200	40S ribosomal protein S25 (RPS25E)	C.G.	S.X.	Please select
0.03	5e+0	32	TaAffx.81430.1.S1_at	CA686175	-	-	4e+0	At1g47280	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	32	TaAffx.78416.1.S1_at	CA732940	-	-	4e+0	At3g25070	RIN4 (RPM1 INTERACTING PROTEIN 4)	C.G.	S.X.	Please select
0.03	5e+0	32	TaAffx.59664.1.S1_at	CA597310	-	-	7e-2	At1g70895	CLE17 (CLAVATA3/ESR-RELATED 17)	C.G.	S.X.	Please select
0.03	5e+0	32	TaAffx.55575.1.S1_at	CA664215	-	-	4e+0	At5g44585	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	32	TaAffx.53140.1.S1_at	CA696147	-	-	2e+1	At5g42720	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please select
0.02	5e+0	32	TaAffx.38431.1.S1_at	CD919413	-	-	4e-2	At4g23895	pleckstrin homology (PH) domain-containing protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At5g19875	832109	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-1	36	Glycine max	GmaAffx.449.1.S1_at	AW781940	-	-	2e+0	At2g28105	-	C.G.	S.X.	Please select
0.04	3e-2	38	Hordeum vulgare	HU02F22u_s_at	HU02F22u	-	-	9e-1	At3g11300	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	36	Oryza sativa	OsAffx.27591.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.223031.1.S1_at	pmrna40818	-	-	9e-3	At3g56730	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	32	Vitis vinifera	1612614_at	CF607041	hypothetical protein LOC100255252	-	3e-4	At1g08460	HDA08	C.G.	S.X.	Please select
0.03	7e+0	30	Zea mays	ZmAffx.249.1.A1_at	AI670263	-	-	3e+0	At1g48020	PMEI1 (PECTIN METHYLESTERASE INHIBITOR 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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