CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.9770.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 90.8 Ta.9770.1.S1_at BJ230730 - - 6e+0 At5g19940 plastid-lipid associated protein PAP-related / fibrillin-related S.X. H.G.
0.73 89.1 TaAffx.84352.1.S1_at CA638782 - - 5e-43 At3g61650 TUBG1 (GAMMA-TUBULIN) S.X. H.G.
0.53 74.9 Ta.4932.3.S1_x_at BJ319726 - - 4e-28 At5g22330 RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) S.X. H.G.
0.50 72.4 Ta.4932.1.A1_a_at BJ274109 - - 8e-2 At1g12890 AP2 domain-containing transcription factor, putative S.X. H.G.
0.40 58.4 Ta.22929.1.S1_at CA702369 - - 8e-2 At5g27740 EMB2775 (EMBRYO DEFECTIVE 2775) S.X. H.G.
0.33 46.9 Ta.1632.1.S1_s_at CK196174 - - 8e-14 At1g19880 regulator of chromosome condensation (RCC1) family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.1 98.5 GSM298083 Crown tissue of Solstice at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
6.1 98.1 GSM298085 Crown tissue of Solstice at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
6.0 98.0 GSM298074 Crown tissue of Paragon at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.4 97.7 GSM314269 tissue type: immature inflorescence - rep1 GSE12508 Transcription patterns during wheat development
5.3 97.6 GSM298073 Crown tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
5.3 97.6 GSM298072 Crown tissue of Paragon at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.3 97.6 GSM298062 Crown tissue of Harnesk at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.2 97.5 GSM314271 tissue type: immature inflorescence - rep3 GSE12508 Transcription patterns during wheat development
5.1 97.5 GSM298088 Crown tissue of Solstice at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.1 97.5 GSM298059 Crown tissue of Harnesk at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.64 1e-133 476 Ta.9770.2.S1_a_at CA621409 - - 4e+0 At5g44265 lipid binding C.G. S.X.
0.64 1e-133 476 Ta.9770.2.S1_x_at CA621409 - - 4e+0 At5g44265 lipid binding C.G. S.X.
0.01 1e-1 38 Ta.7599.1.S1_a_at BJ219890 - - 4e-15 At1g60170 emb1220 (embryo defective 1220) C.G. S.X.
0.01 1e-1 38 Ta.7599.1.S1_at BJ219890 - - 4e-15 At1g60170 emb1220 (embryo defective 1220) C.G. S.X.
0.03 2e+0 34 TaAffx.92669.1.A1_at BJ253414 - - 1e+0 At4g33130 - C.G. S.X.
0.02 2e+0 34 Ta.24372.1.S1_at CK199727 - - 4e-1 At3g45980 HTB9 C.G. S.X.
0.02 2e+0 34 Ta.24372.1.S1_x_at CK199727 - - 6e+0 At3g20600 NDR1 (non race-specific disease resistance 1) C.G. S.X.
0.03 6e+0 32 TaAffx.79984.1.S1_at CA704760 - - 2e-5 At3g54560 HTA11 C.G. S.X.
0.02 6e+0 32 TaAffx.65497.1.S1_at BJ244210 - - 5e-1 At1g29610 - C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e+0 32 Arabidopsis thaliana At5g19940 832116 plastid-lipid associated protein PAP-related / fibrillin-related F:structural molecule activity;P:biological_process unknown;C:chloroplast, chloroplast envelope;PBO - - - C.G. S.X.
0.03 2e+0 34 Glycine max GmaAffx.79075.2.S1_at BI942049 endo-1,4-beta-glucanase precursor - 4e-12 At4g39010 AtGH9B18 (Arabidopsis thaliana glycosyl hydrolase 9B18) C.G. S.X.
0.50 0 1063 Hordeum vulgare Contig11492_at Contig11492 - - 4e+0 At5g26210 AL4 (ALFIN-LIKE 4) C.G. S.X.
0.24 6e-57 222 Oryza sativa Os04g0658600 AK064729.1 - Nucleolar, Nop52 family protein 6e-2 At4g29460 phospholipase A2 gamma, secretory low molecular weight C.G. S.X.
0.02 5e-1 36 Populus trichocarpa Ptp.3352.1.S1_s_at CV260136 hypothetical protein - 2e-21 At2g38560 TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1621997_s_at CF512249 hypothetical protein LOC100259237 - 2e-1 At1g14200 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.23 2e-19 95 Zea mays Zm.9388.1.A1_at BM268498 - - 6e-2 At3g46613 RTFL4 (ROTUNDIFOLIA LIKE 4) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage