Gene omics information

Query gene ID	Ta.9642.2.S1_a_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.3	Ta.9642.2.S1_a_at	CA662794	-	-	4e+0	At4g16360	AMP-activated protein kinase	S.X.	H.G.	Please select
0.67	86.3	Ta.9486.1.S1_a_at	CA613597	-	-	4e-13	At2g18750	calmodulin-binding protein	S.X.	H.G.	Please select
0.55	76.8	Ta.13635.2.S1_a_at	CA499433	-	-	1e-11	At1g55270	kelch repeat-containing F-box family protein	S.X.	H.G.	Please select
0.55	76.8	Ta.13635.2.S1_at	CA499433	-	-	1e-11	At1g55270	kelch repeat-containing F-box family protein	S.X.	H.G.	Please select
0.55	76.8	Ta.13635.1.A1_at	BQ171953	-	-	3e-1	At1g55270	kelch repeat-containing F-box family protein	S.X.	H.G.	Please select
0.43	62.2	TaAffx.30725.1.S1_s_at	CA622632	-	-	1e+0	At1g03170	unknown protein	S.X.	H.G.	Please select
0.27	35.6	Ta.11338.1.S1_at	BQ169872	-	-	3e+0	At4g08593	unknown protein	S.X.	H.G.	Please select
0.17	19.8	Ta.18508.1.S1_a_at	CA652261	-	-	4e-1	At4g37470	hydrolase, alpha/beta fold family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.2	97.5	GSM143509	Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.1	97.5	GSM143518	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.0	97.4	GSM143522	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.5	96.9	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.0	96.3	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.9	96.1	GSM143516	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.8	96.0	GSM143520	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.7	95.8	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.6	95.6	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.6	95.6	GSM143502	Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	7e-11	67	Ta.8619.2.S1_s_at	CA635663	-	-	4e+0	At2g07721	unknown protein	C.G.	S.X.	Please select
0.09	7e-11	67	Ta.8619.2.S1_at	CA635663	-	-	4e+0	At2g07721	unknown protein	C.G.	S.X.	Please select
0.08	1e-9	63	Ta.30375.2.S1_at	CA649063	-	-	4e+0	At3g12510	unknown protein	C.G.	S.X.	Please select
0.08	7e-8	57	Ta.4624.2.A1_at	CA693779	-	-	3e-1	At5g65080	MAF5 (MADS AFFECTING FLOWERING 5)	C.G.	S.X.	Please select
0.10	3e-7	56	Ta.7596.2.S1_a_at	CA610997	-	-	1e+0	At2g37560	ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2)	C.G.	S.X.	Please select
0.04	1e-6	54	Ta.5645.1.S1_x_at	CA609920	-	-	5e-2	At5g65010	ASN2 (ASPARAGINE SYNTHETASE 2)	C.G.	S.X.	Please select
0.10	1e-6	54	Ta.30602.2.S1_at	CA610754	-	-	4e+0	At4g23890	unknown protein	C.G.	S.X.	Please select
0.08	4e-6	52	TaAffx.85825.1.S1_at	CA619282	-	-	4e+0	At2g28305	unknown protein	C.G.	S.X.	Please select
0.07	2e-5	50	Ta.22516.1.S1_at	CD887193	-	-	1e+0	At5g62720	integral membrane HPP family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At4g16360	827331	AMP-activated protein kinase	F:AMP-activated protein kinase activity;P:N-terminal protein myristoylation;C:chloroplast;MFPOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.55836.1.S1_at	AW755893	-	-	4e-3	At4g31340	myosin heavy chain-related	C.G.	S.X.	Please select
0.17	1e-112	404	Hordeum vulgare	Contig6993_at	Contig6993	-	-	1e-19	At4g01370	ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4)	C.G.	S.X.	Please select
0.09	3e-8	59	Oryza sativa	Os10g0533600	AK111579.1	-	Mitogen-activated protein kinase homolog MMK2 (EC2.7.1.37)	5e-36	At4g01370	ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	5e+0	32	Populus trichocarpa	PtpAffx.2874.1.S1_at	CK097518	hypothetical protein	-	1e-19	At1g01560	ATMPK11	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	4e+0	30	Vitis vinifera	1618689_s_at	CF513199	-	-	1e+1	At5g50710	unknown protein	C.G.	S.X.	Please select
0.04	7e+0	30	Zea mays	ZmAffx.1192.1.A1_at	BE025301	-	-	6e+0	At3g53650	histone H2B, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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