Gene omics information

Query gene ID	Ta.9549.3.S1_x_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	Ta.9549.3.S1_x_at	BJ229242	-	-	1e+0	At5g40570	surfeit locus protein 2 family protein / SURF2 family protein	S.X.	H.G.	Please select
0.67	86.3	Ta.9549.1.S1_x_at	CD938416	-	-	4e-37	At3g57150	NAP57 (Arabidopsis thaliana homologue of NAP57)	S.X.	H.G.	Please select
0.67	86.3	Ta.9549.2.S1_s_at	BQ743523	-	-	1e+0	At5g40570	surfeit locus protein 2 family protein / SURF2 family protein	S.X.	H.G.	Please select
0.46	66.8	Ta.28770.2.S1_at	CA705641	-	-	6e-15	At5g52470	FIB1 (FIBRILLARIN 1)	S.X.	H.G.	Please select
0.44	64.5	Ta.3753.1.S1_at	BJ247323	-	-	2e+1	At5g65220	ribosomal protein L29 family protein	S.X.	H.G.	Please select
0.33	46.9	Ta.9201.3.S1_at	CA603340	-	-	1e-4	At1g56110	NOP56 (Arabidopsis homolog of nucleolar protein Nop56)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.2	99.8	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
9.2	99.0	GSM298059	Crown tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
9.2	99.0	GSM298061	Crown tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
9.2	99.0	GSM298062	Crown tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.9	99.0	GSM314257	tissue type: germinating seed, embryo - rep1	GSE12508	Transcription patterns during wheat development
8.7	98.9	GSM298083	Crown tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
8.7	98.9	GSM298093	Crown tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
7.6	98.7	GSM298074	Crown tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.2	98.5	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
7.1	98.5	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	2e-98	359	Ta.9549.1.S1_x_at	CD938416	-	-	4e-37	At3g57150	NAP57 (Arabidopsis thaliana homologue of NAP57)	C.G.	S.X.	Please select
0.43	2e-83	309	Ta.9549.2.S1_s_at	BQ743523	-	-	1e+0	At5g40570	surfeit locus protein 2 family protein / SURF2 family protein	C.G.	S.X.	Please select
0.32	2e-30	133	Ta.3753.1.S1_at	BJ247323	-	-	2e+1	At5g65220	ribosomal protein L29 family protein	C.G.	S.X.	Please select
0.03	2e-2	40	Ta.7459.2.S1_at	BJ314441	-	-	1e+0	At4g31800	WRKY18	C.G.	S.X.	Please select
0.02	9e-2	38	Ta.6291.1.S1_s_at	BJ307495	-	-	2e-1	At2g45520	unknown protein	C.G.	S.X.	Please select
0.02	9e-2	38	Ta.6291.1.S1_at	BJ307495	-	-	2e-1	At2g45520	unknown protein	C.G.	S.X.	Please select
0.03	4e-1	36	TaAffx.83772.2.A1_at	BJ219634	-	-	1e+0	At5g54680	ILR3 (iaa-leucine resistant3)	C.G.	S.X.	Please select
0.01	4e-1	36	Ta.8679.1.S1_x_at	CK157404	-	-	1e-9	At1g62740	stress-inducible protein, putative	C.G.	S.X.	Please select
0.01	4e-1	36	Ta.217.1.S1_x_at	U55859.1	heat shock protein 80	-	0	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At5g40570	834055	surfeit locus protein 2 family protein / SURF2 family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	8e+0	32	Glycine max	PsAffx.CL73Contig1_at	PsAffx.CL73Contig1	-	-	5e+0	At5g61220	complex 1 family protein / LVR family protein	C.G.	S.X.	Please select
0.37	1e-30	133	Hordeum vulgare	Contig15467_at	Contig15467	-	-	5e+0	At3g15358	unknown protein	C.G.	S.X.	Please select
0.13	9e-19	95	Oryza sativa	Os07g0636000	AK102460.1	-	Cbf5p	4e-22	At3g57150	NAP57 (Arabidopsis thaliana homologue of NAP57)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.151520.1.A1_a_at	CV258234	-	-	7e-1	At4g00232	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	4e-1	34	Vitis vinifera	1617892_at	CD714637	-	-	3e-1	At4g12860	UNE14 (unfertilized embryo sac 14)	C.G.	S.X.	Please select
0.17	7e-13	73	Zea mays	Zm.10393.1.A1_at	BQ163144	-	-	2e+0	At5g11425	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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