CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.9440.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.52 73.7 Ta.9440.1.S1_at BJ283686 - - 8e+0 At4g27900 - S.X. H.G.
0.77 90.8 Ta.1942.1.S1_x_at CD887139 - - 2e-1 At2g14890 AGP9 (ARABINOGALACTAN PROTEIN 9) S.X. H.G.
0.77 90.8 Ta.12561.1.S1_at CK196288 - - 3e-2 At1g13380 unknown protein S.X. H.G.
0.71 88.0 Ta.4447.2.S1_x_at CA607764 - - 2e-25 At4g32410 CESA1 (CELLULOSE SYNTHASE 1) S.X. H.G.
0.71 88.0 Ta.1942.1.S1_at CD887139 - - 2e-1 At2g14890 AGP9 (ARABINOGALACTAN PROTEIN 9) S.X. H.G.
0.63 83.1 Ta.28561.1.S1_at CK197498 - - 2e-22 At4g32410 CESA1 (CELLULOSE SYNTHASE 1) S.X. H.G.
0.61 82.0 Ta.12561.3.S1_at BQ169774 - - 3e-2 At1g13380 unknown protein S.X. H.G.
0.46 66.8 Ta.27649.1.S1_at AB158407.1 CesA protein - 2e-80 At5g05170 CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.6 95.6 GSM111227 genotype F48 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
3.6 95.6 GSM314255 tissue type: germinating seed, root - rep2 GSE12508 Transcription patterns during wheat development
3.3 95.0 GSM138201 genotype F48 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.3 95.0 GSM111226 genotype F48 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
3.2 94.8 GSM138207 genotype B11 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.2 94.8 GSM111180 genotype C31 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
3.1 94.5 GSM138197 genotype F82 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.1 94.5 GSM111196 genotype J15 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
3.1 94.5 GSM314254 tissue type: germinating seed, root - rep1 GSE12508 Transcription patterns during wheat development
3.0 94.3 GSM314256 tissue type: germinating seed, root - rep3 GSE12508 Transcription patterns during wheat development
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.47 0 642 Ta.9440.2.S1_x_at CA648427 - - 4e+0 At4g27900 - C.G. S.X.
0.47 3e-172 605 Ta.9440.3.S1_x_at CA702350 - - 4e+0 At4g27900 - C.G. S.X.
0.35 1e-97 357 TaAffx.51714.1.S1_at CA720191 - - 3e+0 At2g32180 PTAC18 (PLASTID TRANSCRIPTIONALLY ACTIVE 18) C.G. S.X.
0.37 5e-63 242 TaAffx.57532.1.S1_at CA618962 - - 2e+1 At4g29340 PRF4 (PROFILIN 4) C.G. S.X.
0.02 6e-1 36 Ta.5213.1.A1_at BJ274095 - - 4e-24 At1g77130 PGSIP2 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 2) C.G. S.X.
0.02 6e-1 36 Ta.3844.1.A1_at CK211740 - - 4e-1 At1g36940 unknown protein C.G. S.X.
0.02 2e+0 34 TaAffx.81791.1.S1_at CA681839 - - 4e+0 At5g41614 unknown protein C.G. S.X.
0.02 2e+0 34 TaAffx.79731.1.S1_s_at BQ801610 - - 1e+0 At3g07630 ADT2 (arogenate dehydratase 2) C.G. S.X.
0.01 2e+0 34 TaAffx.34304.1.A1_at CA681723 - - 3e+0 At4g29630 cytidine deaminase, putative / cytidine aminohydrolase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e+0 32 Arabidopsis thaliana At4g27900 828903 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO - - - C.G. S.X.
0.03 7e-1 36 Glycine max GmaAffx.60656.1.S1_at BQ743135 - - 3e+0 At4g21610 LOL2 (LSD ONE LIKE 2) C.G. S.X.
0.66 0 1061 Hordeum vulgare Contig6874_at Contig6874 - - 8e+0 At5g14360 ubiquitin family protein C.G. S.X.
0.36 1e-77 291 Oryza sativa Os07g0645000 BI802078 - Allergen V5/Tpx-1 related family protein 3e-2 At5g19250 unknown protein C.G. S.X.
0.04 5e-2 40 Populus trichocarpa PtpAffx.5944.1.A1_at CV228432 hypothetical protein - 3e-4 At5g19250 unknown protein C.G. S.X.
0.04 6e-1 34 Vitis vinifera 1617390_at CF372466 - - 2e+0 At5g20100 unknown protein C.G. S.X.
0.44 8e-69 260 Zea mays Zm.18043.1.A1_at AY106689.1 GPI-anchored protein At5g19240 - 3e-1 At3g27270 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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