CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.9411.3.S1_x_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.2 Ta.9411.3.S1_x_at CA499635 - - 2e-4 At1g16810 unknown protein S.X. H.G.
0.80 92.2 Ta.9411.1.S1_x_at BQ161375 - - 5e-4 At1g16810 unknown protein S.X. H.G.
0.67 86.3 Ta.9411.1.S1_a_at BQ161375 - - 5e-4 At1g16810 unknown protein S.X. H.G.
0.67 86.3 Ta.9411.2.S1_x_at CK156676 - - 1e-4 At1g16810 unknown protein S.X. H.G.
0.36 51.9 Ta.9176.1.S1_at BJ218541 - - 7e-47 At1g02130 ARA-5 (ARABIDOPSIS RAS 5) S.X. H.G.
0.14 15.8 Ta.6936.3.S1_x_at BE445451 - - 1e-9 At1g61700 DNA-directed RNA polymerase II, putative (RPB10) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.6 92.9 GSM138173 genotype DH95 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.5 92.5 GSM138213 genotype C10 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.3 91.5 GSM314286 tissue type: 22 DAP embryo - rep3 GSE12508 Transcription patterns during wheat development
2.2 91.0 GSM111187 genotype B68 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
2.2 91.0 GSM314284 tissue type: 22 DAP embryo - rep1 GSE12508 Transcription patterns during wheat development
2.2 91.0 GSM314269 tissue type: immature inflorescence - rep1 GSE12508 Transcription patterns during wheat development
2.1 90.3 GSM138145 Genotype RL4452 developing seed at 5 days after anthesis, biological rep3 location SB GSE5937 Wheat expression level polymorphism study parental genotypes 2 biological reps from SB location
2.0 89.7 GSM138198 genotype C22 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.0 89.7 GSM314270 tissue type: immature inflorescence - rep2 GSE12508 Transcription patterns during wheat development
2.0 89.7 GSM298075 Crown tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.47 9e-155 545 Ta.9411.1.S1_a_at BQ161375 - - 5e-4 At1g16810 unknown protein C.G. S.X.
0.47 9e-155 545 Ta.9411.1.S1_x_at BQ161375 - - 5e-4 At1g16810 unknown protein C.G. S.X.
0.28 3e-105 381 Ta.9411.2.S1_x_at CK156676 - - 1e-4 At1g16810 unknown protein C.G. S.X.
0.06 7e-26 117 Ta.29926.1.S1_at CK215883 - - 7e-17 At3g10350 anion-transporting ATPase family protein C.G. S.X.
0.07 7e-26 117 Ta.1573.1.S1_at CK153469 - - 5e-45 At5g63400 ADK1 (ADENYLATE KINASE 1) C.G. S.X.
0.09 7e-20 97 Ta.8551.1.S1_at BQ162047 - - 8e-3 At5g23300 PYRD (pyrimidine d) C.G. S.X.
0.09 1e-18 93 TaAffx.128482.2.S1_at CK215480 - - 2e-2 At3g10090 40S ribosomal protein S28 (RPS28A) C.G. S.X.
0.05 4e-18 91 Ta.5908.1.S1_at BJ291902 - - 3e-3 At5g65165 SDH2-3 C.G. S.X.
0.05 4e-15 81 TaAffx.13595.1.S1_at CK213837 - - 9e+0 At5g42250 alcohol dehydrogenase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 2e-4 46 Arabidopsis thaliana At1g16810 838252 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP - - - C.G. S.X.
0.12 6e-21 101 Glycine max Gma.5393.3.S1_at BF596227 - - 2e-2 At2g21600 ATRER1B C.G. S.X.
0.46 3e-122 436 Hordeum vulgare Contig5339_s_at Contig5339 - - 3e-2 At2g16015 unknown protein C.G. S.X.
0.18 6e-28 125 Oryza sativa Os02g0727500 AK121427.1 - Conserved hypothetical protein 3e-2 At1g16810 unknown protein C.G. S.X.
0.05 7e-5 48 Populus trichocarpa Ptp.5485.1.S1_at CK087871 - - 7e-2 At4g38680 GRP2 (GLYCINE RICH PROTEIN 2) C.G. S.X.
0.11 4e-12 69 Vitis vinifera 1618386_at BQ800555 - - 4e-1 At1g63105 unknown protein C.G. S.X.
0.20 2e-21 101 Zea mays Zm.18138.1.A1_at CF002755 hypothetical protein LOC100216629 - 9e-5 At1g16810 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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