CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.9408.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 76.8 Ta.9408.1.S1_at BJ309615 - - 2e-4 At1g06960 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative S.X. H.G.
0.75 89.8 Ta.9536.1.S1_at CK208399 - - 1e-31 At2g27200 GTP-binding family protein S.X. H.G.
0.74 89.4 Ta.14404.1.S1_x_at CD864011 - - 9e-8 At2g36930 zinc finger (C2H2 type) family protein S.X. H.G.
0.73 89.1 TaAffx.133775.1.A1_s_at BJ307971 - - 3e-1 At3g19130 ATRBP47B (RNA-binding protein 47B) S.X. H.G.
0.73 89.1 Ta.14538.1.S1_at BJ318592 - - 2e-12 At5g49510 PDF3 (PREFOLDIN 3) S.X. H.G.
0.71 88.0 Ta.14404.1.S1_a_at CD864011 - - 9e-8 At2g36930 zinc finger (C2H2 type) family protein S.X. H.G.
0.64 83.6 Ta.13801.1.S1_at BJ242611 - - 1e-11 At5g57280 methyltransferase S.X. H.G.
0.61 82.0 Ta.14404.3.S1_x_at CA726331 - - 9e-9 At2g36930 zinc finger (C2H2 type) family protein S.X. H.G.
0.53 74.9 Ta.19762.1.A1_s_at CD900299 - - 2e+0 At1g16510 auxin-responsive family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.5 99.1 GSM314284 tissue type: 22 DAP embryo - rep1 GSE12508 Transcription patterns during wheat development
8.8 98.9 GSM314286 tissue type: 22 DAP embryo - rep3 GSE12508 Transcription patterns during wheat development
8.8 98.9 GSM314285 tissue type: 22 DAP embryo - rep2 GSE12508 Transcription patterns during wheat development
7.8 98.7 GSM298094 Crown tissue of Solstice at 9 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
5.6 97.8 GSM298074 Crown tissue of Paragon at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.4 97.7 GSM298073 Crown tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
5.2 97.5 GSM314270 tissue type: immature inflorescence - rep2 GSE12508 Transcription patterns during wheat development
5.1 97.5 GSM314269 tissue type: immature inflorescence - rep1 GSE12508 Transcription patterns during wheat development
4.9 97.3 GSM298062 Crown tissue of Harnesk at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.5 96.9 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 4e-39 163 TaAffx.30652.1.S1_at CA623146 - - 3e-4 At2g30260 U2B'' (U2 small nuclear ribonucleoprotein B) C.G. S.X.
0.06 7e-7 56 Ta.5442.1.S1_at CK193982 - - 2e-3 At2g47580 U1A (SPLICEOSOMAL PROTEIN U1A) C.G. S.X.
0.02 4e-2 40 Ta.3079.1.S1_x_at BJ208202 - - 1e+0 At2g47880 glutaredoxin family protein C.G. S.X.
0.02 4e-2 40 Ta.3079.3.S1_x_at CA594036 - - 4e+0 At1g68500 unknown protein C.G. S.X.
0.02 4e-2 40 Ta.3079.1.S1_at BJ208202 - - 1e+0 At2g47880 glutaredoxin family protein C.G. S.X.
0.02 4e-2 40 Ta.3079.3.S1_at CA594036 - - 4e+0 At1g68500 unknown protein C.G. S.X.
0.02 2e-1 38 TaAffx.130052.3.A1_at CA729896 C2H2 zinc finger protein - 4e+0 At4g39260 GR-RBP8 C.G. S.X.
0.02 2e-1 38 TaAffx.130052.2.S1_at CA733201 C2H2 zinc finger protein - 4e+0 At3g15550 unknown protein C.G. S.X.
0.01 2e-1 38 Ta.878.1.S1_at CK198916 - - 1e-74 At5g50920 CLPC1 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 2e-4 48 Arabidopsis thaliana At1g06960 837206 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MFOPBV - - - C.G. S.X.
0.13 6e-5 50 Glycine max GmaAffx.58650.1.S1_at BE021790 - - 3e-28 At1g06960 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative C.G. S.X.
0.72 0 1191 Hordeum vulgare Contig7570_at Contig7570 - - 1e-7 At1g06960 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative C.G. S.X.
0.50 3e-143 510 Oryza sativa Os.12051.1.S1_at - - - 0 C.G. S.X.
0.18 6e-17 89 Populus trichocarpa PtpAffx.9494.1.S1_at DN491329 hypothetical protein - 1e-26 At2g30260 U2B'' (U2 small nuclear ribonucleoprotein B) C.G. S.X.
0.04 2e-7 56 Vitis vinifera 1621155_at BQ794745 hypothetical protein LOC100248478 - 8e-34 At2g30260 U2B'' (U2 small nuclear ribonucleoprotein B) C.G. S.X.
0.48 1e-160 565 Zea mays Zm.16475.2.S1_at CK371021 - - 2e-7 At2g30260 U2B'' (U2 small nuclear ribonucleoprotein B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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