Gene omics information

Query gene ID	Ta.9290.3.S1_x_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.0	Ta.9290.3.S1_x_at	CA501890	-	-	9e-2	At5g57790	unknown protein	S.X.	H.G.	Please select
0.60	81.0	Ta.9290.1.S1_at	CD865398	-	-	8e-1	At1g14455	unknown protein	S.X.	H.G.	Please select
0.60	81.0	Ta.9290.1.S1_x_at	CD865398	-	-	8e-1	At1g14455	unknown protein	S.X.	H.G.	Please select
0.31	42.7	TaAffx.102859.1.S1_at	CA647205	-	-	3e-1	At5g40250	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.13	14.6	Ta.27319.1.S1_at	BT009349.1	-	-	2e-57	At3g01090	AKIN10 (Arabidopsis SNF1 kinase homolog 10)	S.X.	H.G.	Please select
0.08	9.4	Ta.7012.2.S1_at	CA708999	-	-	3e-15	At1g79870	oxidoreductase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.5	97.8	GSM143498	Jupateco_Lr34 (susceptible), mock inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.2	96.6	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9	96.1	GSM143496	Jupateco_Lr34 (susceptible), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.8	96.0	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.5	95.4	GSM143501	Jupateco_Lr34 (susceptible), mock inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.2	94.8	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.2	94.8	GSM143492	Jupateco_Lr34 (resistant), mock inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.1	94.5	GSM143499	Jupateco_Lr34 (susceptible), mock inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.1	94.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	4e-50	198	Ta.9290.1.S1_at	CD865398	-	-	8e-1	At1g14455	unknown protein	C.G.	S.X.	Please select
0.20	4e-50	198	Ta.9290.1.S1_x_at	CD865398	-	-	8e-1	At1g14455	unknown protein	C.G.	S.X.	Please select
0.21	1e-25	117	TaAffx.53026.1.S1_at	CA697544	-	-	6e+0	At5g20640	unknown protein	C.G.	S.X.	Please select
0.04	1e-16	87	Ta.5940.1.S1_at	CD373882	-	-	1e-18	At3g58970	magnesium transporter CorA-like family protein	C.G.	S.X.	Please select
0.03	1e-16	87	Ta.12540.1.S1_at	BJ241556	-	-	1e-3	At3g56150	EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C)	C.G.	S.X.	Please select
0.10	3e-14	79	TaAffx.87333.1.S1_at	CA502095	-	-	6e+0	At5g26848	unknown protein	C.G.	S.X.	Please select
0.04	4e-13	75	Ta.8602.1.S1_x_at	CA678271	-	-	2e-4	At5g09220	AAP2 (AMINO ACID PERMEASE 2)	C.G.	S.X.	Please select
0.05	4e-13	75	Ta.8010.1.S1_at	BQ161119	-	-	6e-3	At4g11080	high mobility group (HMG1/2) family protein	C.G.	S.X.	Please select
0.04	2e-12	73	Ta.24720.1.S1_at	BJ283856	-	-	2e-4	At5g04280	glycine-rich RNA-binding protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	9e-2	38	Arabidopsis thaliana	At5g57790	835888	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	2e-3	44	Glycine max	GmaAffx.50307.1.S1_s_at	BI424576	-	-	4e-1	At3g46270	receptor protein kinase-related	C.G.	S.X.	Please select
0.24	2e-44	178	Hordeum vulgare	Contig12510_at	Contig12510	-	-	4e-1	At5g26790	unknown protein	C.G.	S.X.	Please select
0.08	1e-2	42	Oryza sativa	Os03g0345700	9631.m02244	-	Hypothetical protein	3e-3	At1g22990	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-3	44	Populus trichocarpa	Ptp.5485.1.S1_at	CK087871	-	-	7e-2	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	7e-3	40	Vitis vinifera	1618386_at	BQ800555	-	-	4e-1	At1g63105	unknown protein	C.G.	S.X.	Please select
0.06	1e-8	59	Zea mays	Zm.5496.1.S1_at	AY105645.1	hypothetical protein LOC100275844	-	4e+0	At2g25650	DNA-binding storekeeper protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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