CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.9251.2.A1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 86.3 Ta.9251.2.A1_at CA606965 - - 3e-2 At4g00810 60S acidic ribosomal protein P1 (RPP1B) S.X. H.G.
0.67 86.3 Ta.9251.2.A1_x_at CA606965 - - 3e-2 At4g00810 60S acidic ribosomal protein P1 (RPP1B) S.X. H.G.
0.67 86.3 Ta.12715.1.S1_s_at BM134770 - - 3e-2 At4g00810 60S acidic ribosomal protein P1 (RPP1B) S.X. H.G.
0.44 64.5 Ta.9251.1.S1_x_at BQ162667 - - 9e+0 At3g25719 unknown protein S.X. H.G.
0.16 18.2 Ta.7046.2.A1_at BJ253526 - - 8e-1 At4g39540 shikimate kinase family protein S.X. H.G.
0.15 17.1 Ta.20361.1.A1_at BJ282460 - - 7e-1 At1g12070 Rho GDP-dissociation inhibitor family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.7 99.7 GSM314265 tissue type: seedling, crown - rep3 GSE12508 Transcription patterns during wheat development
12.2 99.4 GSM314268 tissue type: seedling, leaf - rep3 GSE12508 Transcription patterns during wheat development
11.7 99.3 GSM138178 genotype A88 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
10.5 99.2 GSM138184 genotype C25 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
10.5 99.2 GSM314273 tissue type: floral bracts, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
9.1 99.0 GSM138186 genotype F38b developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
8.6 98.9 GSM324485 Si- B- rep2 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
8.1 98.8 GSM138149 genotype F29 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
7.0 98.5 GSM138174 genotype A81 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.9 98.4 GSM314264 tissue type: seedling, crown - rep2 GSE12508 Transcription patterns during wheat development
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.98 0 1806 Ta.9251.2.A1_x_at CA606965 - - 3e-2 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
0.53 0 678 Ta.12715.1.S1_s_at BM134770 - - 3e-2 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
0.75 1e-180 632 Ta.9251.3.S1_x_at CA703161 - - 5e-1 At3g26934 unknown protein C.G. S.X.
0.75 1e-180 632 Ta.9251.3.S1_at CA703161 - - 5e-1 At3g26934 unknown protein C.G. S.X.
0.56 2e-145 515 Ta.19085.1.S1_at CA603396 - - 5e-4 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
0.63 8e-114 410 Ta.9251.1.S1_x_at BQ162667 - - 9e+0 At3g25719 unknown protein C.G. S.X.
0.33 3e-67 256 TaAffx.92117.1.S1_at BJ282796 - - 3e-2 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
0.28 4e-54 212 Ta.4831.1.S1_at AJ611741 - - 1e-1 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
0.31 1e-41 171 Ta.20562.1.S1_at BQ743969 - - 6e+0 At5g40040 60S acidic ribosomal protein P2 (RPP2E) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-2 40 Arabidopsis thaliana At4g00810 828004 60S acidic ribosomal protein P1 (RPP1B) F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, nucleus;MFPOA - - - C.G. S.X.
0.05 7e-7 56 Glycine max PsAffx.C118000036_at PsAffx.C118000036 - - 1e-1 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
0.59 7e-162 569 Hordeum vulgare Contig4639_s_at Contig4639 - - 3e-2 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
0.19 3e-16 87 Oryza sativa Os04g0667600 AK068657.1 - Heavy metal transport/detoxification proteindomain containing protein 2e+0 At1g15860 - C.G. S.X.
0.04 7e-1 36 Populus trichocarpa PtpAffx.219195.1.S1_at pmrna35047 hypothetical protein - 1e+0 At1g43890 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18) C.G. S.X.
0.02 6e-1 34 Vitis vinifera 1621289_at CF207820 - - 2e-1 At3g44100 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein C.G. S.X.
0.11 9e-10 63 Zea mays Zm.7677.1.A1_at BM331802 metal ion binding protein - 1e+0 At2g35760 integral membrane family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage