Gene omics information

Query gene ID	Ta.9132.3.S1_s_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	72.4	Ta.9132.3.S1_s_at	CA640252	-	-	7e-1	At5g19740	peptidase M28 family protein	S.X.	H.G.	Please select
0.60	81.0	Ta.18704.1.S1_x_at	BT009605.1	-	-	3e-5	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	S.X.	H.G.	Please select
0.46	66.8	Ta.5139.1.S1_at	BT009575.1	-	-	2e-1	At5g19740	peptidase M28 family protein	S.X.	H.G.	Please select
0.44	64.5	Ta.16216.1.S1_s_at	CA602710	-	-	4e+0	At3g51260	PAD1 (20s proteasome alpha subunit pad1)	S.X.	H.G.	Please select
0.43	62.2	Ta.18704.1.S1_at	BT009605.1	-	-	3e-5	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	S.X.	H.G.	Please select
0.27	35.6	Ta.30706.1.S1_at	AY543532.1	expansin EXPA6	-	8e+0	At2g03090	ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
92.9	100.0	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
86.3	100.0	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
11.0	99.3	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
9.0	99.0	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.2	98.1	GSM250902	Tc_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.8	97.9	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
5.6	97.8	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
4.7	97.1	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM246390	SB62_Stem_ rep1_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
3.6	95.6	GSM246391	SB62_Stem_ rep2_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.66	0	1257	Ta.5139.1.S1_at	BT009575.1	-	-	2e-1	At5g19740	peptidase M28 family protein	C.G.	S.X.	Please select
0.22	4e-104	379	Ta.9132.2.S1_at	BJ261742	-	-	5e-7	At5g19740	peptidase M28 family protein	C.G.	S.X.	Please select
0.11	1e-21	105	Ta.9132.1.A1_at	BQ172025	-	-	4e+0	At5g40850	UPM1 (UROPHORPHYRIN METHYLASE 1)	C.G.	S.X.	Please select
0.04	8e-4	46	Ta.27515.1.S1_at	BT009189.1	-	-	2e-3	At5g19740	peptidase M28 family protein	C.G.	S.X.	Please select
0.02	7e-1	36	Ta.25927.1.A1_at	CD454513	-	-	5e+0	At2g36916	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	36	Ta.25927.1.A1_x_at	CD454513	-	-	5e+0	At2g36916	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	34	TaAffx.70061.28.S1_at	CA613569	-	-	6e+0	At5g03740	HD2C (HISTONE DEACETYLASE 2C)	C.G.	S.X.	Please select
0.02	3e+0	34	Ta.4850.1.A1_x_at	BG905091	-	-	2e-2	At1g53620	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	34	Ta.4850.1.A1_s_at	BG905091	-	-	2e-2	At1g53620	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	7e-1	36	Arabidopsis thaliana	At5g19740	832094	peptidase M28 family protein	F:dipeptidase activity;P:proteolysis;C:vacuole;BOMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	4e+0	34	Glycine max	GmaAffx.84404.1.S1_at	BG238613	-	-	4e-6	At4g07670	protease-associated (PA) domain-containing protein	C.G.	S.X.	Please select
0.44	0	702	Hordeum vulgare	Contig12182_at	Contig12182	-	-	2e+0	At2g45800	LIM domain-containing protein	C.G.	S.X.	Please select
0.34	3e-100	367	Oryza sativa	Os01g0740500	9629.m05236	-	Transferrin receptor-like dimerisation regiondomain containing protein	2e-5	At3g54720	AMP1 (ALTERED MERISTEM PROGRAM 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	4e+0	34	Populus trichocarpa	PtpAffx.204498.1.S1_at	pmrna8825	SAUR family protein	-	3e+0	At5g12840	NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	1e+1	30	Vitis vinifera	1621337_at	CF207223	hypothetical protein LOC100266978	-	5e-12	At5g10370	helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related	C.G.	S.X.	Please select
0.04	3e-4	46	Zea mays	Zm.10769.1.A1_at	CF624289	glutamate carboxypeptidase 2	-	2e+0	At2g18890	protein kinase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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