Gene omics information

Query gene ID	Ta.9073.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	92.2	Ta.9073.1.S1_at	CD454241	-	-	6e-20	At1g76690	OPR2	S.X.	H.G.	Please select
0.86	94.1	Ta.10270.1.A1_at	BQ169522	-	-	2e+0	At2g29850	unknown protein	S.X.	H.G.	Please select
0.73	89.1	Ta.10270.2.A1_a_at	CA733411	-	-	2e-2	At3g49190	condensation domain-containing protein	S.X.	H.G.	Please select
0.61	82.0	TaAffx.92842.1.S1_at	BJ245339	-	-	6e+0	At5g19729	unknown protein	S.X.	H.G.	Please select
0.50	72.4	Ta.352.1.S1_at	BQ166621	-	-	5e-1	At4g37685	unknown protein	S.X.	H.G.	Please select
0.47	67.9	Ta.9073.2.A1_at	BF473357	-	-	9e+0	Atcg00430	-	S.X.	H.G.	Please select
0.47	67.9	Ta.18638.1.S1_at	BQ170645	-	-	5e-4	At3g15500	ANAC055 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 55)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
127.4	100.0	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
101.4	100.0	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
95.1	100.0	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
4.6	97.0	GSM246399	SB3_Stem_ rep2_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
4.5	96.9	GSM246389	SB10_Stem_ rep2_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
3.4	95.2	GSM246385	SB165_Stem_ rep2_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
3.2	94.8	GSM246388	SB10_Stem_ rep1_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
2.8	93.6	GSM246392	SB109_Stem_ rep1_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
2.6	92.9	GSM246398	SB3_Stem_ rep1_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
2.0	89.7	GSM246386	SB169_Stem_ rep1_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.60	2e-121	436	Ta.5509.1.S1_at	CA669976	-	-	1e-17	At1g76690	OPR2	C.G.	S.X.	Please select
0.59	2e-99	363	Ta.30735.1.S1_at	CN009367	-	-	1e-17	At1g76680	OPR1	C.G.	S.X.	Please select
0.23	2e-63	244	Ta.30735.2.S1_at	CA604500	-	-	2e-5	At1g76680	OPR1	C.G.	S.X.	Please select
0.13	3e-49	196	Ta.9073.2.A1_at	BF473357	-	-	9e+0	Atcg00430	-	C.G.	S.X.	Please select
0.15	4e-36	153	Ta.5509.3.S1_at	CA604882	-	-	1e-2	At1g17990	12-oxophytodienoate reductase, putative	C.G.	S.X.	Please select
0.15	4e-36	153	Ta.5509.3.S1_x_at	CA604882	-	-	1e-2	At1g17990	12-oxophytodienoate reductase, putative	C.G.	S.X.	Please select
0.13	3e-34	147	TaAffx.29434.1.S1_at	CA642975	-	-	2e+1	At5g38950	germin-like protein-related	C.G.	S.X.	Please select
0.09	1e-20	101	Ta.5509.2.S1_at	CA611291	-	-	5e+0	At3g55252	-	C.G.	S.X.	Please select
0.04	5e-5	50	TaAffx.131227.1.S1_at	CA685834	-	-	9e+0	At1g17990	12-oxophytodienoate reductase, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	6e-20	99	Arabidopsis thaliana	At1g76690	844002	OPR2	Encodes one of two closely related 12-oxophytodienoic acid reductases. This enzyme is not expected to participate in jasmonic acid biosynthesis because during in vitro assays, it shows very little activity with the naturally occurring OPDA isomer.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	2e-8	61	Glycine max	GmaAffx.67883.1.S1_at	BG046605	-	-	1e-15	At1g76690	OPR2	C.G.	S.X.	Please select
0.61	1e-139	496	Hordeum vulgare	Contig5146_at	Contig5146	-	-	4e-21	At1g76690	OPR2	C.G.	S.X.	Please select
0.49	2e-135	484	Oryza sativa	Os.15627.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	3e-7	57	Populus trichocarpa	PtpAffx.221339.1.S1_at	pmrna38168	hypothetical protein	-	2e-22	At1g76680	OPR1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	7e-20	97	Vitis vinifera	1607601_at	CF209956	hypothetical protein LOC100244746	-	2e-15	At1g09400	12-oxophytodienoate reductase, putative	C.G.	S.X.	Please select
0.58	1e-74	280	Zea mays	Zm.7548.1.A1_at	BM078903	12-oxo-phytodienoic acid reductase5	-	5e-11	At1g76690	OPR2	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage