Gene omics information

Query gene ID	Ta.9068.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	89.4	Ta.9068.1.S1_at	BJ320264	-	-	8e-8	At4g12610	transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein	S.X.	H.G.	Please select
0.68	86.5	Ta.11781.1.A1_at	BQ170788	-	-	7e+0	At4g29170	ATMND1	S.X.	H.G.	Please select
0.59	79.8	Ta.26098.2.S1_x_at	BJ242814	EDR1 protein	-	2e+1	Atmg01140	-	S.X.	H.G.	Please select
0.55	76.8	Ta.9192.1.S1_at	CK153172	-	-	3e-3	At1g63770	peptidase M1 family protein	S.X.	H.G.	Please select
0.53	74.9	Ta.9383.1.S1_a_at	BQ483833	-	-	6e-4	At2g37160	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.52	73.7	TaAffx.9320.1.S1_at	BJ250015	-	-	3e-1	At5g14105	unknown protein	S.X.	H.G.	Please select
0.51	73.0	Ta.7089.1.S1_at	CD872336	casein kinase-like protein	-	2e-13	At3g13670	protein kinase family protein	S.X.	H.G.	Please select
0.50	72.4	Ta.128.1.S1_at	U76747.1	Tap	-	5e+0	At5g46730	glycine-rich protein	S.X.	H.G.	Please select
0.50	72.4	Ta.14582.1.S1_at	CK209915	-	-	1e-9	At5g53850	haloacid dehalogenase-like hydrolase family protein	S.X.	H.G.	Please select
0.49	69.7	Ta.6555.1.S1_at	CK208136	-	-	1e-12	At5g63610	CDKE	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.5	95.4	GSM138205	genotype H8 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.9	94.0	GSM138145	Genotype RL4452 developing seed at 5 days after anthesis, biological rep3 location SB	GSE5937	Wheat expression level polymorphism study parental genotypes 2 biological reps from SB location
2.8	93.6	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.7	93.3	GSM138162	genotype E5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.5	92.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.4	92.0	GSM139917	Anther leptotene-pachytene rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.3	91.5	GSM138171	genotype C31 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.3	91.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.2	91.0	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.2	91.0	GSM139918	Anther leptotene-pachytene rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-7	57	TaAffx.92550.1.S1_at	BJ259446	-	-	1e+0	At1g10140	-	C.G.	S.X.	Please select
0.02	8e-5	50	TaAffx.80151.1.S1_at	CA502281	-	-	8e-3	At5g56630	PFK7 (PHOSPHOFRUCTOKINASE 7)	C.G.	S.X.	Please select
0.01	8e-5	50	TaAffx.72045.1.A1_at	CK207771	-	-	2e+0	At3g13227	serine-rich protein-related	C.G.	S.X.	Please select
0.01	8e-5	50	TaAffx.118952.1.S1_at	BJ301213	-	-	2e+0	At4g17850	-	C.G.	S.X.	Please select
0.01	8e-5	50	TaAffx.118896.1.S1_at	BJ232620	-	-	1e+1	At5g50440	MEMB12 (MEMBRIN 12)	C.G.	S.X.	Please select
0.01	8e-5	50	Ta.9466.2.S1_a_at	AJ611106	Chloroplast aspartate aminotransferase	-	2e-20	At4g31990	ASP5 (ASPARTATE AMINOTRANSFERASE 5)	C.G.	S.X.	Please select
0.02	8e-5	50	Ta.9496.3.S1_at	CF133224	-	-	2e-11	At3g06610	DNA-binding enhancer protein-related	C.G.	S.X.	Please select
0.01	8e-5	50	Ta.6561.1.S1_at	CD905008	-	-	8e-1	At3g63250	HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2)	C.G.	S.X.	Please select
0.01	8e-5	50	Ta.5940.1.S1_at	CD373882	-	-	1e-18	At3g58970	magnesium transporter CorA-like family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	8e-8	59	Arabidopsis thaliana	At4g12610	826874	transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein	F:RNA polymerase II transcription factor activity, transcription initiation factor activity, transcription activator activity, DNA binding, catalytic activity;P:transcription initiation from RNA polymerase II promoter, positive regulation of transcription;C:nucleus, chloroplast;MOFBPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e-8	61	Glycine max	GmaAffx.49094.2.S1_at	BM526856	-	-	5e-27	At4g12610	transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein	C.G.	S.X.	Please select
0.80	0	2020	Hordeum vulgare	Contig7151_at	Contig7151	-	-	5e-12	At4g12610	transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein	C.G.	S.X.	Please select
0.59	0	979	Oryza sativa	Os10g0188100	AK071062.1	-	Transcription initiation factor IIF, alpha subunitfamily protein	2e-14	At4g12610	transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	1e-25	119	Populus trichocarpa	PtpAffx.29625.1.A1_a_at	CK090829	hypothetical protein	-	4e-61	At4g12610	transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.01	3e-1	36	Vitis vinifera	1620345_at	BQ792693	similar to FK (FACKEL); delta14-sterol reductase	-	6e-21	At3g52940	FK (FACKEL)	C.G.	S.X.	Please select
0.40	6e-96	351	Zea mays	Zm.5314.1.A1_at	CF637974	transcription initiation factor IIF, alpha subunit	-	4e-11	At4g12610	transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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