Gene omics information

Query gene ID	Ta.906.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	83.1	Ta.906.1.S1_at	CK195658	-	-	3e-22	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	S.X.	H.G.	Please select
0.71	88.0	Ta.28553.13.S1_x_at	BJ300199	-	-	5e-138	At4g05320	UBQ10 (POLYUBIQUITIN 10)	S.X.	H.G.	Please select
0.71	88.0	Ta.28553.13.S1_at	BJ300199	-	-	5e-138	At4g05320	UBQ10 (POLYUBIQUITIN 10)	S.X.	H.G.	Please select
0.67	86.3	Ta.28553.14.A1_x_at	BJ273013	-	-	1e-70	At4g02890	UBQ14	S.X.	H.G.	Please select
0.60	81.0	Ta.28553.10.S1_at	BJ264471	-	-	3e-67	At4g02890	UBQ14	S.X.	H.G.	Please select
0.56	78.6	Ta.28553.12.S1_x_at	BJ242344	Polyubiquitin	-	9e-164	At4g02890	UBQ14	S.X.	H.G.	Please select
0.56	78.6	Ta.1709.1.S1_x_at	CK208738	-	-	2e-53	At2g27600	SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.7	93.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.6	92.9	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.4	92.0	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.4	92.0	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.4	92.0	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
2.3	91.5	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.3	91.5	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.2	91.0	GSM139923	Anther telophaseI-telophaseII rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.2	91.0	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.1	90.3	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	0	660	Ta.906.3.S1_a_at	CA604628	-	-	6e-3	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please select
0.35	0	660	Ta.906.3.S1_at	CA604628	-	-	6e-3	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please select
0.18	5e-95	349	Ta.906.2.A1_at	CA693874	-	-	4e+0	At1g29520	AWPM-19-like membrane family protein	C.G.	S.X.	Please select
0.20	8e-94	345	TaAffx.85990.1.S1_at	CA617791	-	-	4e+0	At5g45490	disease resistance protein-related	C.G.	S.X.	Please select
0.30	7e-82	305	TaAffx.85445.1.S1_at	CA622736	-	-	1e-3	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please select
0.08	3e-19	97	TaAffx.26435.1.S1_at	CA688988	-	-	4e+0	At2g34460	flavin reductase-related	C.G.	S.X.	Please select
0.02	2e-8	61	Ta.23228.1.S1_at	CA713678	-	-	5e-1	At5g15440	EDL1 (EID1-like 1)	C.G.	S.X.	Please select
0.08	3e-7	57	TaAffx.114303.1.S1_s_at	BQ608693	-	-	1e-15	At3g06170	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please select
0.02	3e-7	57	Ta.25574.1.S1_x_at	CD490451	-	-	9e+0	At3g01940	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	3e-22	107	Arabidopsis thaliana	At1g16180	838187	TMS membrane family protein / tumour differentially expressed (TDE) family protein	F:molecular_function unknown;P:unknown;C:endomembrane system, membrane;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	4e-13	77	Glycine max	GmaAffx.68085.1.S1_at	BU761558	-	-	6e-5	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please select
0.71	0	1528	Hordeum vulgare	Contig3707_s_at	Contig3707	-	-	1e-23	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please select
0.61	0	1243	Oryza sativa	Os02g0792900	AK068367.1	-	TMS membrane protein/tumour differentiallyexpressed protein family protein	1e-15	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.20	3e-20	101	Populus trichocarpa	PtpAffx.1257.1.S1_a_at	CF228330	hypothetical protein	-	3e-65	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.15	1e-28	127	Vitis vinifera	1611216_at	CB912018	hypothetical protein LOC100262087	-	4e-126	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please select
0.60	0	1217	Zea mays	Zm.747.1.A1_at	CF627612	hypothetical protein LOC100191588	-	3e-22	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage