CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.9049.2.A1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 86.3 Ta.9049.2.A1_at CA606630 - - 3e-1 At2g19480 NAP1 S.X. H.G.
0.67 86.3 TaAffx.107813.1.S1_at CA694939 - - 4e+0 At5g47830 unknown protein S.X. H.G.
0.61 82.0 Ta.24767.3.S1_at CA737843 - - 4e+0 At3g07590 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative S.X. H.G.
0.53 74.9 Ta.28142.2.S1_at CA644586 - - 3e-1 At5g47700 60S acidic ribosomal protein P1 (RPP1C) S.X. H.G.
0.50 72.4 Ta.11430.1.S1_at CA637362 - - 4e+0 At4g39860 unknown protein S.X. H.G.
0.46 66.8 TaAffx.8084.2.S1_at CA742580 - - 3e-2 At5g02480 - S.X. H.G.
0.40 58.4 Ta.7894.3.A1_at CA680072 - - 4e+0 At3g51300 ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.8 98.9 GSM315203 target strand labeled: Antisense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
8.1 98.8 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.9 98.7 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.9 98.4 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.7 98.4 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
6.3 98.2 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.0 98.0 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3 97.6 GSM138193 genotype B33 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.1 97.5 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.0 97.4 GSM138171 genotype C31 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 8e-14 77 Ta.9049.3.S1_a_at CA611142 - - 1e+0 At4g20520 RNA binding / RNA-directed DNA polymerase C.G. S.X.
0.03 2e-2 40 Ta.26707.1.A1_at CD491628 - - 6e+0 At5g03310 auxin-responsive family protein C.G. S.X.
0.03 7e-2 38 Ta.1112.1.S1_at BE516305 - - 2e+0 At4g05350 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 3e-1 36 TaAffx.5225.1.S1_at CA718443 - - 2e-2 At3g12870 unknown protein C.G. S.X.
0.03 1e+0 34 TaAffx.113079.1.S1_at CA618243 - - 1e-9 At5g13850 NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3) C.G. S.X.
0.03 1e+0 34 Ta.26895.1.A1_at CD491610 - - 2e-2 At1g70070 EMB25 (EMBRYO DEFECTIVE 25) C.G. S.X.
0.02 1e+0 34 Ta.22041.1.A1_at CD864975 - - 4e-3 At5g57120 - C.G. S.X.
0.04 1e+0 34 Ta.16326.2.S1_at CA604981 - - 2e+1 At5g12240 unknown protein C.G. S.X.
0.04 1e+0 34 Ta.16326.2.S1_x_at CA604981 - - 2e+1 At5g12240 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-1 36 Arabidopsis thaliana At2g19480 816467 NAP1 This gene is predicted to encode a nucleosome assembly protein. Plant lines expressing an RNAi construct directed against this gene show a reduction in agrobacterium-mediated root transformation. - - - C.G. S.X.
0.03 2e+0 34 Glycine max HgAffx.10572.1.S1_at CB825096 - - 1e+0 At5g47230 ERF5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5) C.G. S.X.
0.61 4e-88 323 Hordeum vulgare HW03D07u_s_at HW03D07u - - 8e-1 At3g52230 unknown protein C.G. S.X.
0.14 1e-26 121 Oryza sativa Os08g0282400 AK100935.1 - Alpha-SNAP (Fragment) 4e-2 At3g56190 ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) C.G. S.X.
0.03 4e-1 36 Populus trichocarpa PtpAffx.130634.1.S1_at DN501895 hypothetical protein - 9e-5 At1g19690 binding / catalytic/ coenzyme binding C.G. S.X.
0.03 8e-2 36 Vitis vinifera 1610142_at CF208789 hypothetical protein LOC100265973 - 1e+0 At5g38110 ASF1B (ANTI- SILENCING FUNCTION 1B) C.G. S.X.
0.14 2e-19 95 Zea mays Zm.13365.2.A1_at BE123458 alpha-soluble NSF attachment protein - 7e-1 At1g32880 importin alpha-1 subunit, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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