Gene omics information

Query gene ID	Ta.8884.1.A1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.1	Ta.8884.1.A1_at	BQ162561	-	-	3e-1	At3g23680	F-box family protein-related	S.X.	H.G.	Please select
0.33	46.9	TaAffx.57044.1.S1_at	CA637731	-	-	1e+1	At1g32480	oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor	S.X.	H.G.	Please select
0.32	44.4	TaAffx.32023.1.S1_x_at	CA602750	-	-	1e+1	At5g47570	unknown protein	S.X.	H.G.	Please select
0.22	27.1	Ta.9334.2.S1_at	CA608488	-	-	1e+0	At4g30064	LCR61 (Low-molecular-weight cysteine-rich 61)	S.X.	H.G.	Please select
0.06	7.6	TaAffx.98797.3.S1_at	CA639155	-	-	4e-2	At4g16750	DRE-binding transcription factor, putative	S.X.	H.G.	Please select
0.03	4.7	Ta.7279.1.S1_at	CK152216	-	-	1e+1	At2g47400	CP12-1	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
48.1	99.9	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
40.2	99.9	GSM298071	Crown tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
33.2	99.9	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
20.7	99.7	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
16.3	99.6	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
12.3	99.4	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
10.6	99.2	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
8.9	99.0	GSM298073	Crown tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
8.2	98.8	GSM298074	Crown tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.1	98.8	GSM298093	Crown tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-4	46	TaAffx.113650.1.S1_at	CA607543	-	-	4e-3	At5g58390	peroxidase, putative	C.G.	S.X.	Please select
0.07	4e-4	46	Ta.23366.2.S1_x_at	CK212695	-	-	5e-8	At5g40150	peroxidase, putative	C.G.	S.X.	Please select
0.07	4e-4	46	Ta.23366.2.S1_at	CK212695	-	-	5e-8	At5g40150	peroxidase, putative	C.G.	S.X.	Please select
0.04	2e-2	40	TaAffx.116491.2.S1_at	CA639408	-	-	3e-1	At5g05340	peroxidase, putative	C.G.	S.X.	Please select
0.04	2e-2	40	Ta.29603.1.A1_at	CD873114	-	-	5e-1	At4g17690	peroxidase, putative	C.G.	S.X.	Please select
0.02	4e-1	36	Ta.22564.1.S1_at	CA687811	-	-	2e-4	At1g44970	peroxidase, putative	C.G.	S.X.	Please select
0.02	4e-1	36	Ta.20651.1.S1_at	CA498675	-	-	2e-1	At5g40150	peroxidase, putative	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.56126.1.S1_at	CA657057	-	-	9e-1	At2g31425	enzyme inhibitor/ pectinesterase	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.56126.1.S1_x_at	CA657057	-	-	9e-1	At2g31425	enzyme inhibitor/ pectinesterase	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At3g23680	821948	F-box family protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	PsAffx.CL1401Contig1_at	PsAffx.CL1401Contig1	-	-	2e-5	At3g56350	superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative	C.G.	S.X.	Please select
0.06	1e-2	40	Hordeum vulgare	Contig18641_at	Contig18641	-	-	5e-4	At1g68850	peroxidase, putative	C.G.	S.X.	Please select
0.02	4e-2	40	Oryza sativa	Os07g0677100	AF014468.1	-	Peroxidase	2e-4	At5g05340	peroxidase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e+0	32	Populus trichocarpa	PtpAffx.2489.4.A1_at	CV232848	-	-	8e-1	At1g17615	disease resistance protein (TIR-NBS class), putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	32	Vitis vinifera	1616308_at	CF207045.1	-	-	7e-2	At1g56200	emb1303 (embryo defective 1303)	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.15678.2.A1_x_at	CF632171	-	-	5e+0	At1g43130	LCV2 (LIKE COV 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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