Gene omics information

Query gene ID	Ta.8643.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.96	99.3	Ta.8643.1.S1_at	CA610845	-	-	5e-2	At2g22807	-	S.X.	H.G.	Please select
0.70	87.2	Ta.1610.1.A1_at	BE443061	-	-	9e+0	At5g44270	-	S.X.	H.G.	Please select
0.57	79.2	Ta.1795.1.A1_at	BE445285	-	-	7e-2	At3g30180	BR6OX2 (BRASSINOSTEROID-6-OXIDASE 2)	S.X.	H.G.	Please select
0.54	75.5	Ta.116.1.S1_at	BE404653	cla30 protein	-	1e-4	At2g36460	fructose-bisphosphate aldolase, putative	S.X.	H.G.	Please select
0.51	73.0	Ta.16592.1.S1_at	CA609230	-	-	4e+0	At1g09660	KH domain-containing quaking protein, putative	S.X.	H.G.	Please select
0.46	66.8	TaAffx.32029.1.S1_at	CA602639	-	-	4e+0	At2g03640	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.33	46.9	Ta.14132.1.S1_x_at	BQ803864	-	-	5e-3	At5g54500	FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)	S.X.	H.G.	Please select
0.33	46.9	Ta.18283.2.S1_x_at	CA607852	-	-	2e+1	At1g62510	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.32	44.4	Ta.5135.1.S1_at	BJ277412	-	-	3e-1	At5g48190	unknown protein	S.X.	H.G.	Please select
0.23	29.0	Ta.26120.1.S1_x_at	CD452817	-	-	2e+1	At5g59720	HSP18.2 (heat shock protein 18.2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
127.9	100.0	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
36.8	99.9	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
36.6	99.9	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
20.5	99.7	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
20.0	99.7	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
19.9	99.7	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
11.2	99.3	GSM250918	TcLr34_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.9	98.0	GSM250906	TcLr34_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM250912	TcLr34_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
1.6	86.1	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	5e-5	48	Ta.3447.1.A1_at	BJ219241	-	-	1e-1	At5g41870	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please select
0.17	1e-2	40	Ta.8430.1.A1_at	BQ161887	-	-	4e+0	At1g35255	unknown protein	C.G.	S.X.	Please select
0.06	2e-1	36	Ta.11239.1.A1_at	BQ169678	-	-	2e-1	At4g10450	60S ribosomal protein L9 (RPL90D)	C.G.	S.X.	Please select
0.04	3e+0	32	TaAffx.37815.1.A1_at	BJ264000	-	-	4e+0	At5g37860	copper-binding family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Ta.3418.1.S1_x_at	CK214532	glutathione transferase F5	-	6e-1	At5g54430	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Ta.24764.2.A1_a_at	BJ297592	-	-	5e-1	At1g03110	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Ta.24764.2.A1_at	BJ297592	-	-	5e-1	At1g03110	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.01	3e+0	32	Ta.24764.1.S1_at	BJ318034	-	-	9e-1	At2g37340	RSZ33	C.G.	S.X.	Please select
0.02	1e+1	30	TaAffx.98023.1.S1_at	CA701271	-	-	1e-1	At4g38910	BPC5 (BASIC PENTACYSTEINE 5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	5e-2	38	Arabidopsis thaliana	At2g22807	3767872	-	Encodes a defensin-like (DEFL) family protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.73124.1.S1_at	BI471108	-	-	2e-1	At2g28740	HIS4	C.G.	S.X.	Please select
0.37	2e-42	171	Hordeum vulgare	Contig17918_at	Contig17918	-	-	2e-2	At2g40480	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	34	Oryza sativa	Os02g0509600	AK111075.1	-	Conserved hypothetical protein	5e-1	At3g07880	Rho GDP-dissociation inhibitor family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-1	36	Populus trichocarpa	PtpAffx.68656.1.S1_at	CV240354	hypothetical protein	-	1e+0	At5g09220	AAP2 (AMINO ACID PERMEASE 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	9e-1	32	Vitis vinifera	1620139_at	CB914494	-	-	1e-9	At3g07170	sterile alpha motif (SAM) domain-containing protein	C.G.	S.X.	Please select
0.03	5e+0	30	Zea mays	Zm.9799.1.A1_at	AY111917.1	hypothetical protein LOC100217145	-	1e+0	At4g34870	ROC5 (ROTAMASE CYCLOPHILIN 5)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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