Gene omics information

Query gene ID	Ta.8616.1.A1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.3	Ta.8616.1.A1_at	BQ162131	-	-	4e+0	At3g56190	ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2)	S.X.	H.G.	Please select
0.38	54.7	TaAffx.52586.1.S1_at	CA704954	-	-	6e+0	At1g67260	TCP1	S.X.	H.G.	Please select
0.33	46.9	Ta.9641.1.A1_a_at	BJ247599	-	-	1e-3	At3g52600	AtcwINV2 (Arabidopsis thaliana cell wall invertase 2)	S.X.	H.G.	Please select
0.30	40.9	Ta.4824.1.S1_at	CD885392	-	-	2e-2	At4g18790	NRAMP5	S.X.	H.G.	Please select
0.13	14.6	Ta.28847.1.S1_a_at	CA740446	-	-	8e-7	At4g10540	subtilase family protein	S.X.	H.G.	Please select
0.12	13.3	TaAffx.5634.1.S1_at	BJ240434	-	-	1e+1	At3g28925	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.1	99.5	GSM138154	genotype H5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
9.6	99.1	GSM138156	genotype DH91 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
8.5	98.9	GSM138204	genotype H8 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
7.8	98.7	GSM138144	Genotype RL4452 developing seed at 5 days after anthesis, biological rep1 location SB	GSE5937	Wheat expression level polymorphism study parental genotypes 2 biological reps from SB location
7.3	98.6	GSM138167	genotype G30 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.7	98.4	GSM138170	genotype C31 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.7	98.4	GSM138153	genotype G32 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.7	98.4	GSM138180	genotype A35 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.6	98.3	GSM138160	genotype A91 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.5	98.3	GSM138211	genotype B65 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	3e-16	85	Ta.24760.1.S1_at	AY485121.1	-	-	6e-11	At2g37640	EXP3	C.G.	S.X.	Please select
0.10	1e-12	73	Ta.5567.1.S1_at	AY543529.1	expansin EXPA3	-	3e-18	At2g37640	EXP3	C.G.	S.X.	Please select
0.07	3e-7	56	Ta.30773.1.S1_at	AY543531.1	expansin EXPA5	-	7e-4	At2g40610	ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8)	C.G.	S.X.	Please select
0.13	3e-7	56	Ta.18964.1.S1_at	CA644906	-	-	1e+0	At3g15370	ATEXPA12 (ARABIDOPSIS THALIANA EXPANSIN 12)	C.G.	S.X.	Please select
0.16	1e-6	54	TaAffx.111333.1.S1_at	CA643077	Alpha-expansin EXPA1	-	9e-1	At5g08040	TOM5 (MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM5 HOMOLOG)	C.G.	S.X.	Please select
0.10	1e-6	54	Ta.1400.2.S1_a_at	BQ839416	-	-	1e-3	At1g69530	ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)	C.G.	S.X.	Please select
0.15	5e-6	52	Ta.20221.1.S1_at	CA637685	-	-	4e+0	At5g56700	F-box protein-related	C.G.	S.X.	Please select
0.13	3e-4	46	Ta.30669.1.S1_at	AY543534.1	expansin EXPA8	-	1e-5	At2g37640	EXP3	C.G.	S.X.	Please select
0.07	4e-3	42	Ta.26458.1.A1_at	CD490917	-	-	4e+0	At5g60630	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At3g56190	824785	ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2)	Encodes one of two alpha-SNAPs (soluble NSF attachment protein) in Arabidopsis	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	PsAffx.CL729Contig1_at	PsAffx.CL729Contig1	-	-	2e+0	At2g05915	unknown protein	C.G.	S.X.	Please select
0.14	2e-16	85	Hordeum vulgare	Contig3674_at	Contig3674	-	-	1e-14	At2g37640	EXP3	C.G.	S.X.	Please select
0.42	4e-88	325	Oryza sativa	Os02g0267200	9630.m01561	-	Alpha-expansin OsEXPA13	2e-6	At1g20190	ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Populus trichocarpa	PtpAffx.73779.1.S1_at	DN496406	-	-	9e-1	At2g02250	AtPP2-B2 (Phloem protein 2-B2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	5e+0	30	Vitis vinifera	1619082_at	CF215502	hypothetical protein LOC100244103	-	3e-26	At1g26770	ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)	C.G.	S.X.	Please select
0.17	1e-19	95	Zea mays	Zm.667.1.A1_at	AF332171.1	alpha-expansin 3	-	1e-7	At1g20190	ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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