Gene omics information

Query gene ID	Ta.8336.2.S1_a_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.3	Ta.8336.2.S1_a_at	CA679198	-	-	4e+0	At5g06270	unknown protein	S.X.	H.G.	Please select
0.77	90.8	Ta.7147.3.S1_a_at	BJ315882	-	-	5e-3	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	S.X.	H.G.	Please select
0.67	86.3	Ta.6082.1.S1_x_at	BQ752961	-	-	5e-1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	S.X.	H.G.	Please select
0.63	83.1	Ta.7147.3.S1_x_at	BJ315882	-	-	5e-3	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	S.X.	H.G.	Please select
0.61	82.0	Ta.5106.3.S1_a_at	CA690515	-	-	4e+0	At5g07520	GRP18 (GLYCINE-RICH PROTEIN 18)	S.X.	H.G.	Please select
0.60	81.0	Ta.6082.1.S1_at	BQ752961	-	-	5e-1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.7	98.7	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.2	98.1	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
6.2	98.1	GSM143510	Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.5	97.8	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.5	97.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.5	97.8	GSM143516	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.3	97.6	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3	97.6	GSM143524	Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.3	97.6	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.1	97.5	GSM143504	Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1051	Ta.8336.2.S1_x_at	CA679198	-	-	4e+0	At5g06270	unknown protein	C.G.	S.X.	Please select
0.40	2e-150	531	Ta.8336.1.S1_at	BQ161756	-	-	8e+0	At5g06270	unknown protein	C.G.	S.X.	Please select
0.03	3e-4	46	Ta.6405.1.S1_at	CA643483	-	-	2e+0	At1g27050	ATHB54 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 54)	C.G.	S.X.	Please select
0.03	3e-4	46	Ta.14174.1.S1_at	BG263414	-	-	3e-3	At1g49590	formin-binding protein-related	C.G.	S.X.	Please select
0.06	1e-3	44	TaAffx.99201.1.S1_at	CA685457	-	-	5e-8	At4g18230	-	C.G.	S.X.	Please select
0.05	1e-3	44	TaAffx.108260.1.S1_at	CA690309	-	-	4e+0	At5g06080	LBD33 (LOB DOMAIN-CONTAINING PROTEIN 33)	C.G.	S.X.	Please select
0.05	1e-3	44	Ta.23063.1.S1_s_at	BJ285910	-	-	5e+0	At3g17460	PHD finger family protein	C.G.	S.X.	Please select
0.05	1e-3	44	Ta.23063.1.S1_at	BJ285910	-	-	5e+0	At3g17460	PHD finger family protein	C.G.	S.X.	Please select
0.04	1e-3	44	Ta.12966.1.A1_at	CA486384	-	-	1e+0	At2g40510	40S ribosomal protein S26 (RPS26A)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e+0	32	Arabidopsis thaliana	At5g06270	830515	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	6e-3	42	Glycine max	GmaAffx.47819.1.A1_s_at	CD416142	-	-	9e-6	At4g39880	ribosomal protein L23 family protein	C.G.	S.X.	Please select
0.42	4e-131	466	Hordeum vulgare	Contig13125_at	Contig13125	-	-	8e+0	At5g06270	unknown protein	C.G.	S.X.	Please select
0.35	8e-31	135	Oryza sativa	OsAffx.24009.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	6e-3	42	Populus trichocarpa	PtpAffx.5149.2.S1_a_at	CV257760	-	-	3e-6	At1g79750	ATNADP-ME4 (NADP-malic enzyme 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	8e-5	46	Vitis vinifera	1614844_at	CB005866	-	-	1e-3	At1g11790	ADT1 (arogenate dehydratase 1)	C.G.	S.X.	Please select
0.32	3e-24	111	Zea mays	Zm.7535.1.A1_at	AY105427.1	cellular retinaldehyde-binding/triple function, C-terminal	-	8e+0	At5g03204	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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