Gene omics information

Query gene ID	Ta.8258.2.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	Ta.8258.2.S1_at	BJ233335	-	-	1e+0	At3g63095	-	S.X.	H.G.	Please select
0.91	98.2	Ta.10068.1.S1_at	AL830062	-	-	8e-2	At3g07510	unknown protein	S.X.	H.G.	Please select
0.91	98.2	Ta.10042.1.S1_at	CK205237	-	-	2e-4	At4g28780	GDSL-motif lipase/hydrolase family protein	S.X.	H.G.	Please select
0.91	98.2	Ta.8258.3.S1_at	CN012816	-	-	1e+0	At3g63095	-	S.X.	H.G.	Please select
0.80	92.2	Ta.22816.1.S1_x_at	CD885331	type 2 non-specific lipid transfer protein precursor	-	4e+0	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	S.X.	H.G.	Please select
0.77	90.8	Ta.11619.1.A1_at	CN011986	-	-	2e+1	At3g28958	plastocyanin-like domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.5	95.4	GSM111208	genotype F36 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.4	95.2	GSM138171	genotype C31 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.4	95.2	GSM111184	genotype C22 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.3	95.0	GSM111217	genotype D15 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.3	95.0	GSM111222	genotype H5 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.3	95.0	GSM111220	genotype H23 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.2	94.8	GSM111189	genotype H9 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.2	94.8	GSM138193	genotype B33 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.2	94.8	GSM138145	Genotype RL4452 developing seed at 5 days after anthesis, biological rep3 location SB	GSE5937	Wheat expression level polymorphism study parental genotypes 2 biological reps from SB location
3.1	94.5	GSM111215	genotype C58 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.67	3e-155	547	Ta.8258.1.S1_x_at	CN011845	-	-	1e+0	At3g63095	-	C.G.	S.X.	Please select
0.53	3e-137	488	Ta.8258.3.S1_at	CN012816	-	-	1e+0	At3g63095	-	C.G.	S.X.	Please select
0.68	3e-118	424	Ta.22816.1.S1_x_at	CD885331	type 2 non-specific lipid transfer protein precursor	-	4e+0	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	C.G.	S.X.	Please select
0.42	1e-40	167	Ta.30755.1.S1_at	CN007962	-	-	1e+0	At3g09750	unknown protein	C.G.	S.X.	Please select
0.32	1e-37	157	TaAffx.70216.1.S1_s_at	AJ297768.1	-	-	5e-13	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	C.G.	S.X.	Please select
0.34	2e-36	153	Ta.30755.2.S1_x_at	CA702464	-	-	1e+0	At5g39170	unknown protein	C.G.	S.X.	Please select
0.28	1e-34	147	Ta.28327.1.S1_x_at	CD916923	-	-	2e+0	At3g57510	ADPG1	C.G.	S.X.	Please select
0.26	6e-21	101	Ta.13690.1.S1_at	CA706938	-	-	2e+0	At3g08610	unknown protein	C.G.	S.X.	Please select
0.11	9e-14	77	Ta.30757.2.A1_at	CA717906	-	-	1e+0	At5g22000	RHF2A (RING-H2 GROUP F2A)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At3g63095	5008106	-	Encodes a Protease inhibitor/seed storage/LTP family protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	4e-1	36	Glycine max	PsAffx.CL571Contig1_at	PsAffx.CL571Contig1	-	-	9e+0	At3g23175	lesion inducing protein-related	C.G.	S.X.	Please select
0.57	2e-74	278	Hordeum vulgare	Contig150_at	Contig150	-	-	1e+0	At3g63095	-	C.G.	S.X.	Please select
0.11	4e-11	69	Oryza sativa	Os03g0111300	AK062506.1	-	Nonspecific lipid-transfer protein 2 (nsLTP2) (7kDa lipid transfer protein)	3e-1	At3g22275	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e+0	32	Populus trichocarpa	PtpAffx.221693.1.S1_x_at	pmrna38709	hypothetical protein	-	1e-1	At5g52440	HCF106	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	34	Vitis vinifera	1606476_at	CF405915	-	-	2e-1	At4g27120	unknown protein	C.G.	S.X.	Please select
0.14	6e-13	73	Zea mays	Zm.17087.1.S1_at	BM267086	nonspecific lipid-transfer protein	-	1e+1	At3g10915	reticulon family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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