Gene omics information

Query gene ID	Ta.8167.2.S1_s_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	79.8	Ta.8167.2.S1_s_at	BF200226	-	-	4e-1	At3g53610	ATRAB8	S.X.	H.G.	Please select
0.33	46.9	Ta.4276.2.S1_at	AJ613779	-	-	1e+0	At1g60660	CB5LP (CYTOCHROME B5-LIKE PROTEIN)	S.X.	H.G.	Please select
0.22	27.1	Ta.21101.1.S1_at	BT009328.1	-	-	2e-1	At1g75510	transcription initiation factor IIF beta subunit (TFIIF-beta) family protein	S.X.	H.G.	Please select
0.14	15.8	Ta.3039.1.S1_at	CD920575	-	-	1e-6	At3g24740	-	S.X.	H.G.	Please select
0.12	13.3	Ta.4929.1.S1_at	CK205610	-	-	9e-97	At5g46630	clathrin adaptor complexes medium subunit family protein	S.X.	H.G.	Please select
0.08	9.4	Ta.2740.1.S1_at	BG607716	-	-	4e+0	At5g08185	MIR162A (MICRORNA 162A)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.7	93.3	GSM139927	Anther tetrads rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.6	92.9	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.6	92.9	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.5	92.5	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.4	92.0	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.4	92.0	GSM138209	genotype H23 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.3	91.5	GSM138180	genotype A35 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.3	91.5	GSM139925	Anther tetrads rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.3	91.5	GSM138194	genotype J15 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.3	91.5	GSM298091	Leaf tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	0	1223	Ta.8167.2.S1_x_at	BF200226	-	-	4e-1	At3g53610	ATRAB8	C.G.	S.X.	Please select
0.97	0	1223	Ta.8167.2.S1_at	BF200226	-	-	4e-1	At3g53610	ATRAB8	C.G.	S.X.	Please select
0.04	6e-3	42	Ta.21899.1.S1_a_at	CA664664	-	-	1e-2	At5g32440	-	C.G.	S.X.	Please select
0.04	6e-3	42	Ta.21899.1.S1_x_at	CA664664	-	-	1e-2	At5g32440	-	C.G.	S.X.	Please select
0.04	6e-3	42	Ta.21899.1.S1_at	CA664664	-	-	1e-2	At5g32440	-	C.G.	S.X.	Please select
0.06	6e-3	42	Ta.21899.2.S1_x_at	CA654417	-	-	2e-2	At4g11100	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	TaAffx.85176.1.S1_at	CA625004	-	-	4e-6	At3g17760	GAD5 (glutamate decarboxylase 5)	C.G.	S.X.	Please select
0.03	2e+0	34	TaAffx.55615.1.S1_at	CA663594	-	-	1e+0	At4g18110	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Ta.5546.1.S1_a_at	CK165182	-	-	8e-1	At1g06650	2-oxoglutarate-dependent dioxygenase, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-1	36	Arabidopsis thaliana	At3g53610	824529	ATRAB8	GTPase AtRAB8 (atrab8)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	Gma.8591.1.A1_s_at	AI960591	-	-	2e-7	At1g19970	ER lumen protein retaining receptor family protein	C.G.	S.X.	Please select
0.48	5e-76	284	Hordeum vulgare	HVSMEi0001E15r2_s_at	HVSMEi0001E15r2	-	-	3e+0	At3g08710	ATH9 (thioredoxin H-type 9)	C.G.	S.X.	Please select
0.09	9e-13	75	Oryza sativa	Os02g0184500	AK105238.1	-	-	7e-4	At5g32440	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	8e-3	42	Populus trichocarpa	Ptp.229.1.A1_at	CV236477	hypothetical protein	-	3e-8	At5g32440	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	32	Vitis vinifera	1614154_at	CF568802	-	-	7e-8	At1g72440	EDA25 (embryo sac development arrest 25)	C.G.	S.X.	Please select
0.05	4e-8	57	Zea mays	Zm.6516.1.S1_at	AI438697	CUE domain containing protein	-	7e-1	At5g10350	polyadenylate-binding protein family protein / PABP family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage