Gene omics information

Query gene ID	Ta.8051.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	Ta.8051.1.S1_at	CK168230	-	-	3e+0	At5g23310	FSD3 (FE SUPEROXIDE DISMUTASE 3)	S.X.	H.G.	Please select
0.67	86.3	Ta.8044.1.A1_at	BQ161176	-	-	6e+0	At5g20010	RAN-1	S.X.	H.G.	Please select
0.47	67.9	TaAffx.53324.1.S1_x_at	CA693604	-	-	9e+0	At4g09070	-	S.X.	H.G.	Please select
0.43	62.2	TaAffx.5151.1.S1_s_at	CA720674	-	-	7e-5	At3g54090	pfkB-type carbohydrate kinase family protein	S.X.	H.G.	Please select
0.43	62.2	Ta.7493.1.S1_at	CK205703	-	-	2e+0	At3g53050	galactose-binding lectin family protein	S.X.	H.G.	Please select
0.35	49.8	Ta.12083.1.A1_at	CD885615	-	-	1e+0	At5g17470	calmodulin-related protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.6	99.1	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
9.0	99.0	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
9.0	99.0	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.9	99.0	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.9	99.0	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.8	98.9	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.1	98.5	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.2	98.1	GSM314263	tissue type: seedling, crown - rep1	GSE12508	Transcription patterns during wheat development
5.5	97.8	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.4	97.7	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.42	7e-140	498	TaAffx.57113.1.S1_at	CA636450	-	-	4e+0	At5g66350	SHI (SHORT INTERNODES)	C.G.	S.X.	Please select
0.02	3e-3	44	Ta.9210.1.S1_a_at	CD453542	-	-	1e-1	At4g25100	FSD1 (FE SUPEROXIDE DISMUTASE 1)	C.G.	S.X.	Please select
0.02	3e-3	44	Ta.3824.2.S1_a_at	BJ251897	-	-	2e+0	At3g24500	MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C)	C.G.	S.X.	Please select
0.02	2e-1	38	TaAffx.78446.1.S1_at	CA732409	-	-	3e-1	At1g21130	O-methyltransferase, putative	C.G.	S.X.	Please select
0.01	2e-1	38	Ta.3465.1.A1_at	BJ273592	-	-	5e-1	At5g20560	beta-1,3-glucanase, putative	C.G.	S.X.	Please select
0.02	2e-1	38	Ta.28289.1.S1_a_at	CA747010	-	-	2e+0	At1g03870	FLA9 (FASCICLIN-LIKE ARABINOOGALACTAN 9)	C.G.	S.X.	Please select
0.02	2e-1	38	Ta.28289.1.S1_x_at	CA747010	-	-	2e+0	At1g03870	FLA9 (FASCICLIN-LIKE ARABINOOGALACTAN 9)	C.G.	S.X.	Please select
0.02	2e-1	38	Ta.20442.1.A1_at	BJ231438	-	-	1e-10	At2g40360	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.02	8e-1	36	TaAffx.77765.1.S1_at	CA743141	-	-	2e+0	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	3e+0	34	Arabidopsis thaliana	At5g23310	832395	FSD3 (FE SUPEROXIDE DISMUTASE 3)	Fe superoxide dismutase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e-2	40	Glycine max	Gma.3233.1.S1_s_at	M64267.1	Fe-superoxide dismutase	-	6e-13	At4g25100	FSD1 (FE SUPEROXIDE DISMUTASE 1)	C.G.	S.X.	Please select
0.02	4e-1	36	Hordeum vulgare	HVSMEc0006F02r2_at	HVSMEc0006F02r2	-	-	4e+0	At2g34655	unknown protein	C.G.	S.X.	Please select
0.26	1e-65	252	Oryza sativa	Os06g0143000	AB014056.1	-	Iron-superoxide dismutase (EC 1.15.1.1)	1e-2	At5g23310	FSD3 (FE SUPEROXIDE DISMUTASE 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-5	52	Populus trichocarpa	PtpAffx.205239.1.S1_at	pmrna10384	hypothetical protein	-	6e-12	At5g23310	FSD3 (FE SUPEROXIDE DISMUTASE 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e-4	46	Vitis vinifera	1612707_at	CD801530	hypothetical protein LOC100263457	-	3e-14	At5g23310	FSD3 (FE SUPEROXIDE DISMUTASE 3)	C.G.	S.X.	Please select
0.14	4e-59	228	Zea mays	Zm.13849.1.S1_at	CD962380	ATP10 protein	-	2e+0	At1g08220	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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