Gene omics information

Query gene ID	Ta.7882.2.S1_a_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	64.5	Ta.7882.2.S1_a_at	CA645408	-	-	1e+0	At2g04790	unknown protein	S.X.	H.G.	Please select
0.59	79.8	Ta.20700.1.S1_at	CA602436	-	-	3e-1	At5g23395	-	S.X.	H.G.	Please select
0.53	74.9	Ta.13810.1.S1_s_at	CA652498	-	-	3e+0	At1g04250	AXR3 (AUXIN RESISTANT 3)	S.X.	H.G.	Please select
0.46	66.8	Ta.12393.1.A1_at	BQ172239	-	-	7e-2	At4g24070	carbon-carbon lyase	S.X.	H.G.	Please select
0.40	58.4	Ta.13810.1.S1_at	CA652498	-	-	3e+0	At1g04250	AXR3 (AUXIN RESISTANT 3)	S.X.	H.G.	Please select
0.29	39.2	Ta.26188.1.A1_at	CD452630	-	-	6e-1	At3g02720	DJ-1 family protein / protease-related	S.X.	H.G.	Please select
0.21	25.5	Ta.18807.1.A1_at	CA642371	-	-	8e-2	At3g48460	GDSL-motif lipase/hydrolase family protein	S.X.	H.G.	Please select
0.18	21.0	TaAffx.10980.1.S1_at	CA632023	-	-	3e-3	At4g09160	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
82.6	100.0	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
81.8	100.0	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
60.3	99.9	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
22.2	99.8	GSM314264	tissue type: seedling, crown - rep2	GSE12508	Transcription patterns during wheat development
19.3	99.7	GSM314265	tissue type: seedling, crown - rep3	GSE12508	Transcription patterns during wheat development
9.1	99.0	GSM314263	tissue type: seedling, crown - rep1	GSE12508	Transcription patterns during wheat development
8.4	98.9	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.0	98.8	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.8	98.7	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.9	98.4	GSM298074	Crown tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	0	967	Ta.7882.2.S1_at	CA645408	-	-	1e+0	At2g04790	unknown protein	C.G.	S.X.	Please select
0.46	7e-147	519	Ta.7882.1.S1_x_at	BQ160849	-	-	2e+0	At4g16750	DRE-binding transcription factor, putative	C.G.	S.X.	Please select
0.46	7e-147	519	Ta.7882.1.S1_at	BQ160849	-	-	2e+0	At4g16750	DRE-binding transcription factor, putative	C.G.	S.X.	Please select
0.06	5e-6	52	TaAffx.84332.1.S1_at	CA639385	-	-	4e+0	At1g79170	unknown protein	C.G.	S.X.	Please select
0.06	7e-5	48	TaAffx.81824.1.S1_at	CA681447	-	-	1e+0	At4g12460	ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B)	C.G.	S.X.	Please select
0.06	3e-4	46	TaAffx.69962.2.S1_at	CA637784	-	-	3e-1	At2g32410	AXL (AXR1-LIKE)	C.G.	S.X.	Please select
0.06	5e-3	42	TaAffx.97408.1.S1_at	CA661891	-	-	4e+0	At4g04423	endo-1,3(4)-beta-glucanase	C.G.	S.X.	Please select
0.04	2e-2	40	TaAffx.7421.1.S1_at	CA659416	-	-	4e+0	At2g24480	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.04	2e-2	40	TaAffx.56970.1.S1_at	CA639077	-	-	4e+0	At5g63400	ADK1 (ADENYLATE KINASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At2g04790	815022	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e+0	32	Glycine max	PsAffx.CL147Contig2_s_at	PsAffx.CL147Contig2	-	-	2e-1	At1g75580	auxin-responsive protein, putative	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	Contig19785_at	Contig19785	-	-	4e+0	At3g57900	unknown protein	C.G.	S.X.	Please select
0.06	4e-8	59	Oryza sativa	OsAffx.14892.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e+0	32	Populus trichocarpa	PtpAffx.203516.1.S1_at	pmrna6988	hypothetical protein	-	2e+0	At5g08315	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	30	Vitis vinifera	1610294_at	CF373126	-	-	4e-13	At4g25835	AAA-type ATPase family protein	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	ZmAffx.71.1.A1_at	AI665169	hypothetical protein LOC100274794	-	3e+0	At1g50640	ERF3 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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