Gene omics information

Query gene ID	Ta.7716.2.S1_s_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.92	98.5	Ta.7716.2.S1_s_at	BJ317348	-	-	4e+0	At3g26511	unknown protein	S.X.	H.G.	Please select
0.52	73.7	TaAffx.29201.1.S1_at	CA648220	-	-	4e+0	At3g60540	sec61beta family protein	S.X.	H.G.	Please select
0.49	69.7	Ta.7716.1.S1_at	BJ322896	-	-	4e-1	At1g12665	-	S.X.	H.G.	Please select
0.46	66.8	TaAffx.59340.1.S1_at	CA639167	-	-	6e+0	At5g46960	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.46	66.8	Ta.30507.2.S1_x_at	BJ321266	-	-	4e+0	At4g03600	unknown protein	S.X.	H.G.	Please select
0.45	65.2	Ta.4678.3.S1_x_at	CK215282	WRKY8 transcription factor	-	5e+0	At3g21150	zinc finger (B-box type) family protein	S.X.	H.G.	Please select
0.44	64.5	Ta.8482.1.A1_at	BQ161961	WRKY27 transcription factor	-	3e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	S.X.	H.G.	Please select
0.41	59.6	Ta.4678.2.S1_at	CK163938	WRKY8 transcription factor	-	1e-2	At5g07600	oleosin / glycine-rich protein	S.X.	H.G.	Please select
0.37	53.0	Ta.4678.1.S1_at	CD935984	WRKY8 transcription factor	-	3e+0	At5g07100	WRKY26	S.X.	H.G.	Please select
0.37	53.0	Ta.4678.1.S1_x_at	CD935984	WRKY8 transcription factor	-	3e+0	At5g07100	WRKY26	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
62.0	99.9	GSM143521	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
23.7	99.8	GSM138154	genotype H5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
23.3	99.8	GSM143508	Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
15.7	99.6	GSM314267	tissue type: seedling, leaf - rep2	GSE12508	Transcription patterns during wheat development
9.1	99.0	GSM143511	Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
8.9	99.0	GSM143524	Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.9	98.7	GSM143495	Jupateco_Lr34 (resistant), mock inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.7	98.7	GSM314268	tissue type: seedling, leaf - rep3	GSE12508	Transcription patterns during wheat development
6.9	98.4	GSM138169	genotype B68 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.4	98.2	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.63	0	688	TaAffx.32523.1.S1_at	CA593702	-	-	3e-1	At3g54050	fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative	C.G.	S.X.	Please select
0.23	5e-52	204	Ta.7716.1.S1_at	BJ322896	-	-	4e-1	At1g12665	-	C.G.	S.X.	Please select
0.23	5e-43	174	TaAffx.51112.2.S1_at	CA663202	-	-	3e-1	At3g03010	aminoacyl-tRNA hydrolase	C.G.	S.X.	Please select
0.26	1e-40	167	TaAffx.51112.1.S1_at	CA730910	-	-	4e+0	At3g45160	unknown protein	C.G.	S.X.	Please select
0.09	5e-9	61	TaAffx.25836.1.S1_at	CA695372	-	-	2e-3	At1g70190	ribosomal protein L12 family protein	C.G.	S.X.	Please select
0.03	5e-3	42	TaAffx.6495.1.S1_at	CA731234	-	-	2e+0	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	C.G.	S.X.	Please select
0.04	2e-2	40	TaAffx.64972.1.S1_at	BJ268119	-	-	1e+0	At2g36261	unknown protein	C.G.	S.X.	Please select
0.04	2e-2	40	TaAffx.108526.1.S1_at	CA687381	-	-	4e+0	At5g54745	DegP protease family	C.G.	S.X.	Please select
0.04	2e-2	40	Ta.7263.3.S1_a_at	BJ236428	-	-	2e-2	At3g27940	LBD26 (LOB DOMAIN-CONTAINING PROTEIN 26)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	4e+0	32	Arabidopsis thaliana	At3g26511	6240254	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-1	38	Glycine max	GmaAffx.54556.1.S1_at	BG651481	-	-	9e+0	At1g53160	SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4)	C.G.	S.X.	Please select
0.04	5e-1	34	Hordeum vulgare	Contig22190_s_at	Contig22190	-	-	4e-2	At4g27745	-	C.G.	S.X.	Please select
0.04	9e-3	42	Oryza sativa	Os06g0674800	CB630069	-	ARM repeat fold domain containing protein	8e-1	At1g49310	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e-2	40	Populus trichocarpa	Ptp.5645.2.A1_at	CV253732	hypothetical protein	-	3e-26	At3g49010	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e-3	40	Vitis vinifera	1619846_at	CB981983	hypothetical protein LOC100247893	-	3e-11	At2g39140	SVR1 (SUPPRESSOR OF VARIEGATION 1)	C.G.	S.X.	Please select
0.04	3e-2	38	Zea mays	Zm.6913.2.A1_a_at	AI065646	-	-	9e-1	At2g16060	AHB1 (ARABIDOPSIS HEMOGLOBIN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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