Gene omics information

Query gene ID	Ta.7685.1.A1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.3	Ta.7685.1.A1_at	CK166088	-	-	1e-63	At4g16340	SPK1 (SPIKE1)	S.X.	H.G.	Please select
0.80	92.2	Ta.5089.1.A1_at	BJ276838	-	-	1e-28	At1g73720	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.77	90.8	Ta.4932.1.A1_s_at	BJ274109	-	-	8e-2	At1g12890	AP2 domain-containing transcription factor, putative	S.X.	H.G.	Please select
0.61	82.0	Ta.4932.1.A1_at	BJ274109	-	-	8e-2	At1g12890	AP2 domain-containing transcription factor, putative	S.X.	H.G.	Please select
0.55	76.8	Ta.3789.3.A1_at	CD873220	-	-	2e-5	At3g05590	RPL18 (RIBOSOMAL PROTEIN L18)	S.X.	H.G.	Please select
0.55	76.8	Ta.7661.1.S1_at	BQ171269	-	-	2e-7	At1g64350	SEH1H	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.7	99.1	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.5	98.3	GSM139915	Anther pre-meiosis rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.4	98.2	GSM139920	Anther diplotene-anaphaseI rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.2	98.1	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.2	98.1	GSM139922	Anther telophaseI-telophaseII rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.0	98.0	GSM139917	Anther leptotene-pachytene rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.8	97.9	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
5.7	97.9	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.7	97.9	GSM139912	Anther pre-meiosis rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.6	97.8	GSM298061	Crown tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.50	2e-145	515	TaAffx.113252.1.S1_at	CA616924	-	-	4e-37	At4g16340	SPK1 (SPIKE1)	C.G.	S.X.	Please select
0.02	7e-4	46	TaAffx.129240.1.S1_at	AW447949	-	-	6e-1	At2g47450	CAO (CHAOS)	C.G.	S.X.	Please select
0.03	7e-4	46	TaAffx.109695.1.S1_at	CA670707	-	-	2e-1	At5g54745	DegP protease family	C.G.	S.X.	Please select
0.02	7e-4	46	Ta.5543.1.A1_at	CK154361	-	-	1e-1	At5g46160	ribosomal protein L14 family protein / huellenlos paralog (HLP)	C.G.	S.X.	Please select
0.01	7e-4	46	Ta.13851.1.S1_at	CK170778	-	-	7e-23	At2g03120	ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE)	C.G.	S.X.	Please select
0.02	7e-4	46	Ta.12361.1.A1_at	BQ172188	-	-	6e-1	At3g12100	cation efflux family protein / metal tolerance protein, putative	C.G.	S.X.	Please select
0.03	3e-3	44	TaAffx.82787.1.S1_at	CA667088	-	-	2e+1	At5g61630	unknown protein	C.G.	S.X.	Please select
0.03	3e-3	44	TaAffx.82644.1.S1_at	CA669286	-	-	3e-2	At5g39670	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.03	3e-3	44	TaAffx.78023.1.S1_at	CA738626	-	-	6e+0	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	1e-63	244	Arabidopsis thaliana	At4g16340	827328	SPK1 (SPIKE1)	mutant has Seedling lethal; Cotyledon, leaf-shape, trichome defects; Putative Cytoskeletal Protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.46	3e-34	147	Glycine max	Gma.2044.3.S1_at	CA784369	-	-	3e-92	At4g16340	SPK1 (SPIKE1)	C.G.	S.X.	Please select
0.69	0	1780	Hordeum vulgare	Contig7969_at	Contig7969	-	-	2e-66	At4g16340	SPK1 (SPIKE1)	C.G.	S.X.	Please select
0.20	0	882	Oryza sativa	Os03g0328000	AK059469.1	-	Adapter protein SPIKE1	2e-44	At4g16340	SPK1 (SPIKE1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.48	5e-70	266	Populus trichocarpa	Ptp.5207.1.S1_at	CV257120	hypothetical protein	-	2e-124	At4g16340	SPK1 (SPIKE1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	7e-1	34	Vitis vinifera	1609809_at	BQ796862	hypothetical protein LOC100244942	-	3e-1	At5g38110	ASF1B (ANTI- SILENCING FUNCTION 1B)	C.G.	S.X.	Please select
0.40	1e-117	422	Zea mays	Zm.5985.3.A1_a_at	CF041948	hypothetical protein LOC100273928	-	4e-28	At4g16340	SPK1 (SPIKE1)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage