Gene omics information

Query gene ID	Ta.7608.1.S1_x_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.1	Ta.7608.1.S1_x_at	CD452795	-	-	7e-5	At2g17200	ubiquitin family protein	S.X.	H.G.	Please select
0.67	86.3	Ta.1905.2.A1_x_at	BE446722	-	-	2e-9	At2g30110	ATUBA1	S.X.	H.G.	Please select
0.67	86.3	Ta.7585.1.S1_at	CK206711	-	-	3e-9	At1g72710	CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)	S.X.	H.G.	Please select
0.53	74.9	Ta.95.1.S1_at	M90663.1	-	-	4e-32	At2g30110	ATUBA1	S.X.	H.G.	Please select
0.53	74.9	Ta.9607.1.A1_a_at	CA708572	-	-	5e+0	At5g24510	60s acidic ribosomal protein P1, putative	S.X.	H.G.	Please select
0.36	51.9	Ta.1770.1.S1_a_at	CK209608	-	-	6e-1	At4g32930	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.4	92.0	GSM111232	genotype H8 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.3	91.5	GSM111211	genotype B11 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.3	91.5	GSM111212	genotype DH91 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.3	91.5	GSM111186	genotype B68 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.3	91.5	GSM138178	genotype A88 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.2	91.0	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.2	91.0	GSM111245	genotype G13 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.2	91.0	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.2	91.0	GSM138159	genotype F36 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.2	91.0	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	3352	Ta.7608.1.S1_a_at	CD452795	-	-	7e-5	At2g17200	ubiquitin family protein	C.G.	S.X.	Please select
0.40	4e-139	496	Ta.7608.2.A1_a_at	CA703665	-	-	5e+0	At1g07745	RAD51D (ARABIDOPSIS HOMOLOG OF RAD51 D)	C.G.	S.X.	Please select
0.40	4e-139	496	Ta.7608.2.A1_x_at	CA703665	-	-	5e+0	At1g07745	RAD51D (ARABIDOPSIS HOMOLOG OF RAD51 D)	C.G.	S.X.	Please select
0.25	6e-101	369	Ta.7608.3.A1_x_at	BJ240481	-	-	1e+0	At5g22791	-	C.G.	S.X.	Please select
0.37	3e-50	200	Ta.5312.1.S1_a_at	CA642442	-	-	1e-6	At2g17200	ubiquitin family protein	C.G.	S.X.	Please select
0.33	3e-50	200	Ta.5312.1.S1_x_at	CA642442	-	-	1e-6	At2g17200	ubiquitin family protein	C.G.	S.X.	Please select
0.10	2e-14	81	TaAffx.58078.1.S1_at	CA622588	-	-	2e+1	At4g09720	Ras-related GTP-binding protein, putative	C.G.	S.X.	Please select
0.10	1e-9	65	Ta.15576.1.S1_at	CA485581	-	-	1e+0	At2g31550	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.05	7e-8	59	Ta.17584.1.S1_at	CA622088	-	-	4e+0	At2g26320	AGL33 (AGAMOUS-LIKE 33)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	7e-5	50	Arabidopsis thaliana	At2g17200	816225	ubiquitin family protein	F:molecular_function unknown;P:protein modification process;C:unknown;MBOPFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	6e-3	44	Glycine max	Gma.2119.4.S1_at	BM187843	-	-	1e-5	At2g17200	ubiquitin family protein	C.G.	S.X.	Please select
0.86	0	1620	Hordeum vulgare	Contig4644_at	Contig4644	-	-	3e-7	At2g17200	ubiquitin family protein	C.G.	S.X.	Please select
0.56	1e-121	438	Oryza sativa	Os03g0131300	AK100656.1	-	Ubiquitin domain containing protein	5e-12	At2g17200	ubiquitin family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.17	1e-37	159	Populus trichocarpa	PtpAffx.33603.1.A1_a_at	CV229028	hypothetical protein	-	1e-18	At2g17200	ubiquitin family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	2e-5	50	Vitis vinifera	1622793_at	CB920514	hypothetical protein LOC100247146 /// hypothetical protein LOC100250759	-	3e-5	At2g17200	ubiquitin family protein	C.G.	S.X.	Please select
0.33	9e-58	224	Zea mays	Zm.2654.2.S1_at	CF040564	-	-	5e-12	At2g17200	ubiquitin family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage