Gene omics information

Query gene ID	Ta.7591.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	Ta.7591.1.S1_at	CD872021	-	-	2e-8	At4g37760	SQE3 (squalene epoxidase 3)	S.X.	H.G.	Please select
0.46	66.8	TaAffx.65248.1.A1_at	BJ254955	-	-	3e-1	At1g69720	ho3 (HEME OXYGENASE 3)	S.X.	H.G.	Please select
0.04	5.8	Ta.3336.1.S1_x_at	BJ260197	-	-	1e+0	At5g28630	glycine-rich protein	S.X.	H.G.	Please select
0.04	5.8	Ta.27044.1.S1_at	BJ263152	-	-	2e-1	At1g67070	DIN9 (DARK INDUCIBLE 9)	S.X.	H.G.	Please select
0.03	4.7	Ta.28745.1.S1_x_at	CK200152	-	-	2e-14	At1g01090	PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA)	S.X.	H.G.	Please select
0.02	3.6	Ta.3560.1.S1_s_at	BJ318088	-	-	2e-4	At3g47810	MAG1 (MAIGO 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.0	99.0	GSM298079	Leaf tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.9	98.4	GSM324491	Si+ B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
6.4	98.2	GSM298080	Leaf tissue of Solstice at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM324490	Si+ B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.1	96.4	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM324485	Si- B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.5	95.4	GSM298055	Leaf tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.4	95.2	GSM298056	Leaf tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM298068	Leaf tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.0	94.3	GSM324492	Si+ B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	1e-46	188	TaAffx.53243.1.S1_at	CA694770	-	-	4e+0	At3g32160	unknown protein	C.G.	S.X.	Please select
0.07	1e-37	159	Ta.10209.1.A1_at	BJ249763	-	-	4e+0	At4g10860	unknown protein	C.G.	S.X.	Please select
0.06	2e-30	135	Ta.4700.1.S1_at	CA622788	-	-	2e+0	At4g13150	unknown protein	C.G.	S.X.	Please select
0.06	2e-30	135	Ta.23676.2.S1_at	CN010376	-	-	6e+0	At4g10860	unknown protein	C.G.	S.X.	Please select
0.06	2e-30	135	Ta.23676.2.S1_s_at	CN010376	-	-	6e+0	At4g10860	unknown protein	C.G.	S.X.	Please select
0.07	6e-30	133	Ta.7135.2.S1_at	BJ311657	-	-	4e+0	Atcg00730	-	C.G.	S.X.	Please select
0.05	9e-26	119	TaAffx.813.1.S1_at	BQ803437	-	-	9e+0	At5g64260	EXL2 (EXORDIUM LIKE 2)	C.G.	S.X.	Please select
0.06	4e-25	117	TaAffx.56126.1.S1_at	CA657057	-	-	9e-1	At2g31425	enzyme inhibitor/ pectinesterase	C.G.	S.X.	Please select
0.06	4e-25	117	TaAffx.56126.1.S1_x_at	CA657057	-	-	9e-1	At2g31425	enzyme inhibitor/ pectinesterase	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	2e-8	61	Arabidopsis thaliana	At4g37760	829932	SQE3 (squalene epoxidase 3)	F:squalene monooxygenase activity;P:response to jasmonic acid stimulus, sterol biosynthetic process, response to wounding;C:endomembrane system, integral to membrane;BOFMPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.19	1e-16	89	Glycine max	GmaAffx.20777.1.S1_at	BE819900	-	-	4e-8	At2g22830	SQE2 (squalene epoxidase 2)	C.G.	S.X.	Please select
0.81	0	2422	Hordeum vulgare	Contig5809_at	Contig5809	-	-	2e-14	At1g58440	XF1	C.G.	S.X.	Please select
0.56	0	1342	Oryza sativa	Os03g0231800	AK065032.1	-	XF1 protein (Squalene monooxygenase, putative)	1e-18	At4g37760	SQE3 (squalene epoxidase 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.35	4e-44	180	Populus trichocarpa	PtpAffx.205391.1.S1_at	pmrna10677	hypothetical protein	-	3e-68	At1g58440	XF1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.15	2e-17	89	Vitis vinifera	1612781_at	CB978740	hypothetical protein LOC100254037	-	2e-2	At4g37760	SQE3 (squalene epoxidase 3)	C.G.	S.X.	Please select
0.55	0	686	Zea mays	Zm.7407.1.A1_a_at	BM074289	squalene monooxygenase	-	3e-7	At4g37760	SQE3 (squalene epoxidase 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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