Gene omics information

Query gene ID	Ta.7354.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.3	Ta.7354.1.S1_at	CK215574	-	-	6e-1	At3g19200	unknown protein	S.X.	H.G.	Please select
0.80	92.2	Ta.8402.1.S1_at	CA662453	-	-	4e-2	At2g28605	-	S.X.	H.G.	Please select
0.73	89.1	Ta.5247.1.A1_at	CA709980	-	-	5e+0	At2g19045	RALFL13 (RALF-LIKE 13)	S.X.	H.G.	Please select
0.50	72.4	Ta.7354.3.S1_x_at	CA690172	-	-	4e-3	At5g26070	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.09	10.4	TaAffx.79442.1.S1_at	CA715632	-	-	3e+0	At5g59150	ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D)	S.X.	H.G.	Please select
0.07	8.6	Ta.8244.2.S1_a_at	CA651206	-	-	1e-15	At5g42990	UBC18 (ubiquitin-conjugating enzyme 18)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.0	99.1	GSM143502	Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
8.1	98.8	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.9	98.7	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.8	98.7	GSM298091	Leaf tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
7.7	98.7	GSM143504	Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
6.9	98.4	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
6.9	98.4	GSM143503	Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
6.8	98.4	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
6.6	98.3	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
6.4	98.2	GSM143518	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.47	1e-94	347	Ta.7354.2.S1_x_at	CA661631	-	-	3e-1	At3g28500	60S acidic ribosomal protein P2 (RPP2C)	C.G.	S.X.	Please select
0.36	4e-42	173	Ta.7354.3.S1_x_at	CA690172	-	-	4e-3	At5g26070	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.36	4e-42	173	Ta.7354.3.S1_at	CA690172	-	-	4e-3	At5g26070	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.23	2e-31	137	Ta.7288.1.S1_at	BJ318237	-	-	3e-1	At5g09440	EXL4 (EXORDIUM LIKE 4)	C.G.	S.X.	Please select
0.14	1e-23	111	TaAffx.112095.1.S1_at	CA627136	-	-	3e-1	At1g15360	SHN1 (SHINE 1)	C.G.	S.X.	Please select
0.05	2e-16	87	TaAffx.98930.1.A1_at	CK214676	CBFIIId-12.1 /// CBFIIId-B12	-	9e+0	At4g34700	complex 1 family protein / LVR family protein	C.G.	S.X.	Please select
0.04	7e-16	85	Ta.332.1.S1_at	BQ171062	-	-	3e+0	At2g43970	La domain-containing protein	C.G.	S.X.	Please select
0.05	7e-16	85	Ta.22984.1.S1_x_at	CK211804	-	-	3e-24	At1g29930	CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.06	3e-15	83	TaAffx.132445.1.A1_at	CA646406	-	-	7e+0	At4g38410	dehydrin, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	36	Arabidopsis thaliana	At3g19200	821454	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	5e-2	40	Glycine max	Gma.17292.1.A1_s_at	AW310570	-	-	1e+0	At5g14602	unknown protein	C.G.	S.X.	Please select
0.65	6e-135	480	Hordeum vulgare	Contig5002_at	Contig5002	-	-	8e-3	At1g22680	unknown protein	C.G.	S.X.	Please select
0.17	6e-15	83	Oryza sativa	Os11g0113300	BX898462	-	Conserved hypothetical protein	5e-1	At4g20470	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	8e-1	36	Populus trichocarpa	Ptp.6340.1.S1_at	BU888207	hypothetical protein	-	2e-2	At5g59000	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	3e-3	42	Vitis vinifera	1619815_at	CB973946	hypothetical protein LOC100267277	-	4e-7	At5g58375	unknown protein	C.G.	S.X.	Please select
0.23	8e-23	107	Zea mays	Zm.1615.1.S1_at	AY106014.1	hypothetical protein LOC100279676	-	1e+0	At5g23405	high mobility group (HMG1/2) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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