CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.7311.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 83.1 Ta.7311.1.S1_at CK196830 - - 2e-1 At2g45140 PVA12 (PLANT VAP HOMOLOG 12) S.X. H.G.
0.80 92.2 Ta.7585.1.S1_at CK206711 - - 3e-9 At1g72710 CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2) S.X. H.G.
0.71 88.0 Ta.7608.1.S1_x_at CD452795 - - 7e-5 At2g17200 ubiquitin family protein S.X. H.G.
0.67 86.3 Ta.1905.2.A1_x_at BE446722 - - 2e-9 At2g30110 ATUBA1 S.X. H.G.
0.53 74.9 Ta.95.1.S1_at M90663.1 - - 4e-32 At2g30110 ATUBA1 S.X. H.G.
0.47 67.9 Ta.9607.1.A1_a_at CA708572 - - 5e+0 At5g24510 60s acidic ribosomal protein P1, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.1 96.4 GSM314276 tissue type: pistil, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
3.9 96.1 GSM314277 tissue type: pistil, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
3.8 96.0 GSM314275 tissue type: pistil, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
3.6 95.6 GSM111211 genotype B11 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
3.0 94.3 GSM138197 genotype F82 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.9 94.0 GSM111187 genotype B68 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
2.8 93.6 GSM111177 genotype E5 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
2.8 93.6 GSM111191 genotype G32 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
2.8 93.6 GSM111215 genotype C58 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
2.7 93.3 GSM111181 genotype C31 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.86 0 2641 Ta.7311.1.S1_x_at CK196830 - - 2e-1 At2g45140 PVA12 (PLANT VAP HOMOLOG 12) C.G. S.X.
0.36 0 642 Ta.7311.3.S1_a_at CA639744 - - 7e-2 At2g45140 PVA12 (PLANT VAP HOMOLOG 12) C.G. S.X.
0.02 2e-1 38 TaAffx.86388.1.S1_at CA609704 - - 2e+1 At5g07090 40S ribosomal protein S4 (RPS4B) C.G. S.X.
0.02 9e-1 36 TaAffx.97873.1.S1_at BJ268431 - - 2e+0 At4g25220 transporter, putative C.G. S.X.
0.02 9e-1 36 Ta.1578.1.S1_at BE445776 - - 9e-1 At5g12235 CLE22 (CLAVATA3/ESR-RELATED 22) C.G. S.X.
0.01 9e-1 36 Ta.1453.1.S1_a_at BE429897 - - 2e-15 At3g58140 phenylalanyl-tRNA synthetase class IIc family protein C.G. S.X.
0.02 4e+0 34 TaAffx.86810.1.S1_at CA600264 - - 2e-1 At3g43583 unknown protein C.G. S.X.
0.02 4e+0 34 TaAffx.57263.1.S1_s_at CD930219 - - 5e+0 At4g36900 RAP2.10 (related to AP2 10) C.G. S.X.
0.01 4e+0 34 TaAffx.38380.1.S1_at BJ240779 - - 5e+0 At3g61900 auxin-responsive family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 38 Arabidopsis thaliana At2g45140 819122 PVA12 (PLANT VAP HOMOLOG 12) Encodes a Plant VAMP-Associated protein that localizes to the ER and binds to the sitosterol-binding protein ORP3a. The WFDE motif in ORP3a appears to be important for this direct interaction. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent. - - - C.G. S.X.
0.03 2e-5 52 Glycine max Gma.733.2.S1_a_at AW703939 - - 2e-7 At3g60600 VAP (VESICLE ASSOCIATED PROTEIN) C.G. S.X.
0.78 0 1245 Hordeum vulgare Contig5361_at Contig5361 - - 3e+0 At4g29103 unknown protein C.G. S.X.
0.37 4e-100 367 Oryza sativa Os01g0936800 AK103322.1 - Major sperm protein domain containing protein 6e-2 At5g47180 vesicle-associated membrane family protein / VAMP family protein C.G. S.X.
0.05 3e-4 48 Populus trichocarpa PtpAffx.6641.2.S1_at CK103735 - - 3e-7 At1g08820 VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2) C.G. S.X.
0.02 7e-2 38 Vitis vinifera 1620743_at CF610054 hypothetical protein LOC100241913 - 4e-1 At5g47180 vesicle-associated membrane family protein / VAMP family protein C.G. S.X.
0.17 7e-55 214 Zea mays Zm.2640.1.A1_at CF628991 hypothetical protein LOC100217097 - 1e-1 At5g27400 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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