CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.7274.3.S1_a_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 93.4 Ta.7274.3.S1_a_at AJ612375 - - 1e-3 At1g79650 RAD23 S.X. H.G.
0.67 86.3 Ta.1286.2.S1_x_at BQ606415 - - 4e+0 At5g61412 unknown protein S.X. H.G.
0.60 81.0 Ta.30799.3.S1_a_at CA720672 - - 6e-2 At5g54580 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.55 76.8 TaAffx.91476.1.S1_at BJ316914 - - 7e-5 At3g17590 BSH (BUSHY GROWTH) S.X. H.G.
0.50 72.4 TaAffx.77390.1.S1_at CD893386 histone deacetylase - 1e-19 At5g63110 HDA6 (HISTONE DEACETYLASE 6) S.X. H.G.
0.50 72.4 Ta.2207.2.S1_a_at CA612248 - - 5e-25 At5g05780 RPN8A (RP NON-ATPASE SUBUNIT 8A) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.0 97.4 GSM298071 Crown tissue of Paragon at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.1 96.4 GSM298074 Crown tissue of Paragon at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.0 96.3 GSM298073 Crown tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.9 96.1 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
3.9 96.1 GSM298072 Crown tissue of Paragon at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.8 96.0 GSM138154 genotype H5 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.5 95.4 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.4 95.2 GSM298084 Crown tissue of Solstice at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.3 95.0 GSM111194 genotype C25 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
3.0 94.3 GSM298064 Crown tissue of Harnesk at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.43 0 997 Ta.7274.2.S1_at CD891006 - - 1e-3 At1g16190 DNA repair protein RAD23, putative C.G. S.X.
0.20 2e-18 93 TaAffx.112694.1.S1_at CA621792 - - 5e+0 At3g02540 RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3) C.G. S.X.
0.05 1e-3 44 TaAffx.31111.1.S1_at CA619398 - - 1e+0 At1g02380 unknown protein C.G. S.X.
0.04 6e-3 42 TaAffx.112817.1.S1_at CA620646 - - 1e+0 At5g59480 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.04 6e-3 42 TaAffx.112817.1.S1_x_at CA620646 - - 1e+0 At5g59480 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.03 3e-1 36 TaAffx.95321.1.S1_at BJ278226 - - 2e+0 At1g27450 APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) C.G. S.X.
0.03 3e-1 36 TaAffx.95321.1.S1_s_at BJ278226 - - 2e+0 At1g27450 APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) C.G. S.X.
0.03 1e+0 34 TaAffx.548.1.A1_s_at BQ801517 - - 1e-16 At2g34480 60S ribosomal protein L18A (RPL18aB) C.G. S.X.
0.03 1e+0 34 TaAffx.548.1.A1_at BQ801517 - - 1e-16 At2g34480 60S ribosomal protein L18A (RPL18aB) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 1e-3 44 Arabidopsis thaliana At1g79650 844304 RAD23 putative DNA repair protein RAD23 - - - C.G. S.X.
0.18 9e-21 101 Glycine max GmaAffx.83790.1.S1_at BE555651 - - 6e-25 At1g16190 DNA repair protein RAD23, putative C.G. S.X.
0.43 0 803 Hordeum vulgare Contig7569_at Contig7569 - - 9e-7 At1g16190 DNA repair protein RAD23, putative C.G. S.X.
0.20 2e-84 313 Oryza sativa Os02g0179300 AK069065.1 - RAD23 protein, isoform II 9e-10 At1g16190 DNA repair protein RAD23, putative C.G. S.X.
0.04 1e-7 57 Populus trichocarpa PtpAffx.677.2.S1_at CV267907 - - 4e-24 At1g16190 DNA repair protein RAD23, putative C.G. S.X.
0.04 2e+0 32 Vitis vinifera 1620997_at CD799067 L-galactose dehydrogenase - 2e-16 At4g33670 L-galactose dehydrogenase (L-GalDH) C.G. S.X.
0.16 1e-54 212 Zea mays Zm.1979.1.S1_at AI948181 DNA repair protein RAD23-1 - 6e-11 At1g79650 RAD23 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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