Gene omics information

Query gene ID	Ta.7147.3.S1_a_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	Ta.7147.3.S1_a_at	BJ315882	-	-	5e-3	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	S.X.	H.G.	Please select
0.80	92.2	Ta.7147.3.S1_x_at	BJ315882	-	-	5e-3	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	S.X.	H.G.	Please select
0.73	89.1	Ta.6082.1.S1_x_at	BQ752961	-	-	5e-1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	S.X.	H.G.	Please select
0.67	86.3	Ta.6082.1.S1_at	BQ752961	-	-	5e-1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	S.X.	H.G.	Please select
0.61	82.0	Ta.7147.2.S1_at	CK161455	-	-	9e-9	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	S.X.	H.G.	Please select
0.53	74.9	Ta.8336.2.S1_a_at	CA679198	-	-	4e+0	At5g06270	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.8	97.9	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.7	97.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.4	97.7	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.9	97.3	GSM143510	Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.5	96.9	GSM143513	Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.5	96.9	GSM143505	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.4	96.8	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3	96.7	GSM143511	Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.3	96.7	GSM143507	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.3	96.7	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1096	Ta.7147.3.S1_x_at	BJ315882	-	-	5e-3	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	C.G.	S.X.	Please select
0.59	0	888	Ta.7147.2.S1_a_at	CK161455	-	-	9e-9	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	C.G.	S.X.	Please select
0.59	0	888	Ta.7147.2.S1_at	CK161455	-	-	9e-9	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	C.G.	S.X.	Please select
0.49	0	795	Ta.7147.1.S1_at	CD882627	-	-	1e-8	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	C.G.	S.X.	Please select
0.46	4e-56	218	TaAffx.108501.1.S1_at	CA687671	-	-	1e+0	At1g48770	unknown protein	C.G.	S.X.	Please select
0.28	3e-47	188	TaAffx.112690.1.S1_at	CA621857	-	-	3e-1	At2g27080	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	C.G.	S.X.	Please select
0.13	3e-10	65	Ta.5773.1.S1_at	BJ237756	-	-	7e-53	At2g33120	SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)	C.G.	S.X.	Please select
0.10	5e-6	52	TaAffx.92790.1.S1_at	BJ253278	-	-	1e-7	At1g04760	ATVAMP726	C.G.	S.X.	Please select
0.07	2e-5	50	TaAffx.58587.1.S1_at	CA618339	-	-	8e-14	At2g32670	ATVAMP725	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	5e-3	42	Arabidopsis thaliana	At3g54300	824597	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	Encodes a member of Synaptobrevin -like protein family. VAMP727 is a R-SNARE and interacts with SYP22/VTI11/SYP51. It is required for trafficking of storage proteins to the protein storage vacuoles (PSV) and also for PSV organization and biogenesis. Loss of function mutations have no phenotype but double mutants with SYP22 are embryo lethal.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	6e-3	42	Glycine max	Gma.10915.3.S1_at	BG154267	-	-	4e-22	At2g33120	SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)	C.G.	S.X.	Please select
0.58	0	827	Hordeum vulgare	Contig4909_at	Contig4909	-	-	6e-4	At1g04750	VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)	C.G.	S.X.	Please select
0.38	2e-127	456	Oryza sativa	Os08g0558600	AK066924.1	-	Vesicle-associated membrane protein 727(AtVAMP727)	6e-7	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	7e-9	61	Populus trichocarpa	PtpAffx.97764.1.S1_at	CB240411	hypothetical protein	-	1e-38	At2g33120	SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.34	6e-15	79	Vitis vinifera	1606773_at	CF208569	hypothetical protein LOC100243052	-	1e-18	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	C.G.	S.X.	Please select
0.37	1e-112	404	Zea mays	Zm.4849.1.S1_at	AI712259	hypothetical protein LOC100216858	-	3e-3	At1g04750	VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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