Gene omics information

Query gene ID	Ta.6965.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	92.2	Ta.6965.1.S1_at	BJ313225	-	-	3e+0	At3g03847	auxin-responsive family protein	S.X.	H.G.	Please select
0.67	86.3	Ta.10650.1.A1_at	BQ166187	-	-	4e+0	At4g24026	unknown protein	S.X.	H.G.	Please select
0.67	86.3	TaAffx.91428.1.S1_at	BJ313181	-	-	3e+0	At4g21450	vesicle-associated membrane family protein / VAMP family protein	S.X.	H.G.	Please select
0.67	86.3	TaAffx.16068.1.S1_at	BQ168935	-	-	1e+0	At1g33260	protein kinase family protein	S.X.	H.G.	Please select
0.57	79.2	Ta.14323.1.S1_at	BU100287	-	-	1e+1	At4g18593	dual specificity protein phosphatase-related	S.X.	H.G.	Please select
0.48	69.0	Ta.15859.1.S1_at	BJ310415	-	-	1e+0	At5g50070	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.5	99.7	GSM298059	Crown tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
19.5	99.7	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
18.3	99.7	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
17.4	99.6	GSM298073	Crown tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
15.3	99.6	GSM298061	Crown tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
14.8	99.5	GSM298074	Crown tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
13.5	99.5	GSM298084	Crown tissue of Solstice at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
13.4	99.5	GSM298062	Crown tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
12.9	99.4	GSM298060	Crown tissue of Harnesk at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
12.7	99.4	GSM298085	Crown tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	4e-2	38	TaAffx.26238.1.S1_at	CA690757	-	-	6e-2	At3g10950	60S ribosomal protein L37a (RPL37aB)	C.G.	S.X.	Please select
0.04	7e-1	34	Ta.19066.1.S1_at	CA646775	-	-	1e+0	At2g24840	AGL61 (AGAMOUS-LIKE 61)	C.G.	S.X.	Please select
0.03	3e+0	32	Ta.4650.1.A1_a_at	BQ162177	-	-	1e-1	At4g11030	long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative	C.G.	S.X.	Please select
0.03	3e+0	32	Ta.4650.1.A1_at	BQ162177	-	-	1e-1	At4g11030	long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative	C.G.	S.X.	Please select
0.03	3e+0	32	Ta.27457.3.S1_x_at	CA729143	-	-	2e-9	At3g09390	MT2A (METALLOTHIONEIN 2A)	C.G.	S.X.	Please select
0.03	3e+0	32	Ta.27457.6.S1_x_at	BJ286831	-	-	1e-4	At5g02380	MT2B (METALLOTHIONEIN 2B)	C.G.	S.X.	Please select
0.03	3e+0	32	Ta.27457.5.S1_x_at	BF200045	-	-	9e-5	At3g09390	MT2A (METALLOTHIONEIN 2A)	C.G.	S.X.	Please select
0.03	3e+0	32	Ta.27457.8.S1_x_at	BJ264173	-	-	6e-12	At3g09390	MT2A (METALLOTHIONEIN 2A)	C.G.	S.X.	Please select
0.03	3e+0	32	Ta.27457.1.S1_x_at	CD894008	-	-	2e-9	At3g09390	MT2A (METALLOTHIONEIN 2A)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+0	32	Arabidopsis thaliana	At3g03847	821118	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e+0	32	Glycine max	GmaAffx.6328.1.S1_at	CA802868	-	-	3e+0	At3g01260	aldose 1-epimerase/ carbohydrate binding / catalytic/ isomerase	C.G.	S.X.	Please select
0.55	2e-42	171	Hordeum vulgare	EBpi01_SQ002_J02_at	EBpi01_SQ002_J02	-	-	4e-1	At5g53980	ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52)	C.G.	S.X.	Please select
0.05	1e-3	44	Oryza sativa	Os03g0733600	AK058575.1	-	SSXT family protein	4e-2	At1g01160	SSXT protein-related / transcription co-activator-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	4e+0	32	Populus trichocarpa	PtpAffx.207563.1.S1_at	pmrna15013	hypothetical protein	-	4e-1	At5g44710	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	3e+0	30	Vitis vinifera	1607248_at	CB979618	hypothetical protein LOC100242432	-	4e+0	At2g12977	unknown protein	C.G.	S.X.	Please select
0.05	1e-6	52	Zea mays	Zm.17201.1.S1_at	CK371115	GRF-interacting factor 1-like	-	1e+1	At5g23830	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage