CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.6936.3.S1_x_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 86.3 Ta.6936.3.S1_x_at BE445451 - - 1e-9 At1g61700 DNA-directed RNA polymerase II, putative (RPB10) S.X. H.G.
0.60 81.0 Ta.9761.1.S1_x_at BJ221581 - - 9e-48 At2g47640 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative S.X. H.G.
0.60 81.0 Ta.6936.2.S1_x_at CK207652 - - 2e-9 At1g61700 DNA-directed RNA polymerase II, putative (RPB10) S.X. H.G.
0.55 76.8 Ta.9761.1.S1_at BJ221581 - - 9e-48 At2g47640 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative S.X. H.G.
0.44 64.5 Ta.9200.1.S1_at CK211244 - - 4e-38 At1g07170 - S.X. H.G.
0.25 32.1 Ta.14429.1.S1_at BJ215467 - - 1e-20 At1g21720 PBC1 (PROTEASOME BETA SUBUNIT C1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.4 95.2 GSM298094 Crown tissue of Solstice at 9 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
3.0 94.3 GSM314284 tissue type: 22 DAP embryo - rep1 GSE12508 Transcription patterns during wheat development
2.8 93.6 GSM138205 genotype H8 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.8 93.6 GSM314285 tissue type: 22 DAP embryo - rep2 GSE12508 Transcription patterns during wheat development
2.8 93.6 GSM314269 tissue type: immature inflorescence - rep1 GSE12508 Transcription patterns during wheat development
2.8 93.6 GSM314286 tissue type: 22 DAP embryo - rep3 GSE12508 Transcription patterns during wheat development
2.7 93.3 GSM298064 Crown tissue of Harnesk at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
2.7 93.3 GSM138187 genotype F38b developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.7 93.3 GSM314270 tissue type: immature inflorescence - rep2 GSE12508 Transcription patterns during wheat development
2.6 92.9 GSM314275 tissue type: pistil, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.92 0 1049 Ta.6936.3.S1_at BE445451 - - 1e-9 At1g61700 DNA-directed RNA polymerase II, putative (RPB10) C.G. S.X.
0.58 1e-173 609 Ta.6936.2.S1_x_at CK207652 - - 2e-9 At1g61700 DNA-directed RNA polymerase II, putative (RPB10) C.G. S.X.
0.56 7e-104 377 Ta.6936.1.S1_a_at BJ217420 - - 2e-9 At1g11475 NRPB10 C.G. S.X.
0.56 7e-104 377 Ta.6936.1.S1_x_at BJ217420 - - 2e-9 At1g11475 NRPB10 C.G. S.X.
0.56 7e-104 377 Ta.6936.1.S1_at BJ217420 - - 2e-9 At1g11475 NRPB10 C.G. S.X.
0.35 3e-69 262 Ta.17202.1.S1_at CA618761 - - 7e-11 At1g11475 NRPB10 C.G. S.X.
0.03 1e-3 44 TaAffx.40933.1.S1_at BG909152 - - 1e-7 At5g40290 metal-dependent phosphohydrolase HD domain-containing protein C.G. S.X.
0.04 5e-3 42 TaAffx.59584.2.S1_x_at CA704832 - - 9e-1 At2g39705 RTFL8 (ROTUNDIFOLIA LIKE 8) C.G. S.X.
0.04 5e-3 42 TaAffx.59584.1.S1_at CA598591 - - 4e+0 At1g07770 RPS15A (ribosomal protein s15a) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 1e-9 63 Arabidopsis thaliana At1g61700 842467 DNA-directed RNA polymerase II, putative (RPB10) Protein of unknown function that is homologous to the At1g11475 locus that encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V. Homologous to budding yeast RPB10. - - - C.G. S.X.
0.28 3e-17 89 Glycine max Gma.4836.1.S1_s_at BI969339 - - 3e-10 At1g61700 DNA-directed RNA polymerase II, putative (RPB10) C.G. S.X.
0.77 1e-134 478 Hordeum vulgare Contig4660_s_at Contig4660 - - 2e-14 At1g61700 DNA-directed RNA polymerase II, putative (RPB10) C.G. S.X.
0.35 2e-68 260 Oryza sativa Os12g0180400 AK062318.1 - DNA-directed RNA polymerase II 7.6 kDa polypeptide(EC 2.7.7.6) (RPB10) (RPB7.6) (RPABC5) 2e-14 At1g11475 NRPB10 C.G. S.X.
0.28 2e-12 73 Populus trichocarpa Ptp.5415.1.S1_a_at CK099666 hypothetical protein - 9e-26 At1g61700 DNA-directed RNA polymerase II, putative (RPB10) C.G. S.X.
0.27 3e-29 127 Vitis vinifera 1615438_at CB979703 hypothetical protein LOC100267114 - 1e-25 At1g11475 NRPB10 C.G. S.X.
0.32 2e-62 238 Zea mays Zm.7565.1.A1_at BM078965 DNA-directed RNA polymerase II 8.2 kDa polypeptide /// DNA-directed RNA polymerase II 8.2 kDa polypeptide /// DNA-directed RNA polymerase II 8.2 kDa polypeptide - 3e-7 At1g61700 DNA-directed RNA polymerase II, putative (RPB10) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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