Gene omics information

Query gene ID	Ta.6867.3.A1_a_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	72.4	Ta.6867.3.A1_a_at	BJ228637	-	-	1e+0	At1g17147	-	S.X.	H.G.	Please select
0.60	81.0	Ta.14195.3.S1_a_at	CA640695	-	-	4e+0	At4g34450	coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative	S.X.	H.G.	Please select
0.57	79.2	Ta.6867.2.S1_a_at	BJ263192	-	-	3e-4	At3g61050	NTMC2T4	S.X.	H.G.	Please select
0.55	76.8	Ta.14195.3.S1_x_at	CA640695	-	-	4e+0	At4g34450	coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative	S.X.	H.G.	Please select
0.47	67.9	Ta.23734.3.S1_a_at	CA605815	-	-	1e+0	At5g23405	high mobility group (HMG1/2) family protein	S.X.	H.G.	Please select
0.41	59.6	Ta.3584.2.S1_a_at	CA601548	-	-	1e+0	At5g25102	unknown protein	S.X.	H.G.	Please select
0.30	40.9	TaAffx.114677.1.S1_at	CA659671	-	-	1e-8	At2g41620	nucleoporin interacting component family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.9	98.0	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
4.2	96.6	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
4.1	96.4	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.7	95.8	GSM111237	genotype F38b developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.4	95.2	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM298062	Crown tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.1	94.5	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.0	94.3	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.47	4e-93	339	Ta.6867.2.S1_a_at	BJ263192	-	-	3e-4	At3g61050	NTMC2T4	C.G.	S.X.	Please select
0.15	2e-89	327	Ta.6867.1.S1_s_at	CA722211	-	-	5e-18	At3g61050	NTMC2T4	C.G.	S.X.	Please select
0.07	5e-3	40	TaAffx.86355.1.S1_at	CA610460	-	-	3e+0	At5g16570	GLN1	C.G.	S.X.	Please select
0.04	3e-1	34	Ta.3887.3.A1_s_at	BJ248686	-	-	2e-2	At1g53780	ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide binding / peptidyl-prolyl cis-trans isomerase	C.G.	S.X.	Please select
0.02	1e+0	32	Ta.18342.1.A1_at	CD867576	-	-	7e-1	At1g60880	AGL56	C.G.	S.X.	Please select
0.04	5e+0	30	TaAffx.6560.1.S1_at	CA683082	-	-	4e+0	At5g62520	SRO5 (SIMILAR TO RCD ONE 5)	C.G.	S.X.	Please select
0.05	5e+0	30	TaAffx.24120.1.S1_at	CA724781	-	-	8e-1	At4g17730	SYP23 (SYNTAXIN OF PLANTS 23)	C.G.	S.X.	Please select
0.04	5e+0	30	TaAffx.131241.1.A1_at	BQ801939	-	-	1e+0	At2g33480	ANAC041 (Arabidopsis NAC domain containing protein 41)	C.G.	S.X.	Please select
0.03	5e+0	30	Ta.9791.1.S1_at	CA651818	-	-	1e+0	At3g56740	ubiquitin-associated (UBA)/TS-N domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	1e+0	32	Arabidopsis thaliana	At1g17147	6240987	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	1e-1	36	Glycine max	Gma.12560.1.A1_at	CD391363	-	-	3e-3	At1g60890	phosphatidylinositol-4-phosphate 5-kinase family protein	C.G.	S.X.	Please select
0.16	7e-84	307	Hordeum vulgare	Contig8033_at	Contig8033	-	-	3e-10	At3g61050	NTMC2T4	C.G.	S.X.	Please select
0.16	2e-22	105	Oryza sativa	Os07g0409100	AK060230.1	-	CLB1	7e-8	At3g61050	NTMC2T4	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	7e+0	30	Populus trichocarpa	PtpAffx.75102.1.S1_at	DN486747	hypothetical protein	-	3e+0	At3g05290	PNC1 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e-1	32	Vitis vinifera	1616291_at	BQ799189	hypothetical protein LOC100263245	-	3e-1	At1g21050	unknown protein	C.G.	S.X.	Please select
0.09	1e-11	67	Zea mays	Zm.7828.1.A1_at	BM378668	-	-	2e+0	At3g61050	NTMC2T4	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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