Gene omics information

Query gene ID	Ta.684.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	89.8	Ta.684.1.S1_at	M90664.1	-	-	3e-24	At5g06460	ATUBA2	S.X.	H.G.	Please select
0.50	72.4	Ta.713.1.A1_x_at	CD914558	-	-	4e-1	At5g18820	EMB3007 (embryo defective 3007)	S.X.	H.G.	Please select
0.44	64.5	Ta.713.1.A1_at	CD914558	-	-	4e-1	At5g18820	EMB3007 (embryo defective 3007)	S.X.	H.G.	Please select
0.36	51.9	Ta.713.2.S1_x_at	BG262446	-	-	4e-25	At2g28000	CPN60A (CHAPERONIN-60ALPHA)	S.X.	H.G.	Please select
0.27	35.6	Ta.12123.1.S1_at	BQ171638	-	-	7e-32	At5g56280	CSN6A	S.X.	H.G.	Please select
0.24	30.3	Ta.6252.2.S1_a_at	CK211615	-	-	1e+0	At4g22240	plastid-lipid associated protein PAP, putative	S.X.	H.G.	Please select
0.22	27.1	Ta.29627.1.A1_at	BQ281547	-	-	8e-38	At1g22920	CSN5A (COP9 SIGNALOSOME 5A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.1	96.4	GSM111185	genotype C22 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.0	96.3	GSM111187	genotype B68 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.9	96.1	GSM111231	genotype B33 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.6	95.6	GSM138153	genotype G32 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.5	95.4	GSM111247	genotype H10 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.5	95.4	GSM138163	genotype E5 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.4	95.2	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
3.4	95.2	GSM111201	genotype D39 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.3	95.0	GSM111210	genotype B11 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.3	95.0	GSM111244	genotype G13 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	3e-36	155	Ta.95.1.S1_at	M90663.1	-	-	4e-32	At2g30110	ATUBA1	C.G.	S.X.	Please select
0.20	2e-34	149	Ta.23105.1.S1_at	CA595099	-	-	1e-8	At5g06460	ATUBA2	C.G.	S.X.	Please select
0.15	5e-29	131	Ta.1905.1.A1_x_at	CA657392	-	-	3e-24	At2g30110	ATUBA1	C.G.	S.X.	Please select
0.15	5e-29	131	Ta.1905.1.A1_a_at	CA657392	-	-	3e-24	At2g30110	ATUBA1	C.G.	S.X.	Please select
0.04	2e-13	79	Ta.1905.2.A1_x_at	BE446722	-	-	2e-9	At2g30110	ATUBA1	C.G.	S.X.	Please select
0.08	2e-9	65	Ta.1905.3.S1_x_at	BJ282136	-	-	2e-2	At5g06460	ATUBA2	C.G.	S.X.	Please select
0.08	2e-9	65	Ta.1905.3.S1_at	BJ282136	-	-	2e-2	At5g06460	ATUBA2	C.G.	S.X.	Please select
0.09	1e-7	59	TaAffx.31178.1.S1_at	CA618757	-	-	8e-11	At2g30110	ATUBA1	C.G.	S.X.	Please select
0.01	1e-4	50	Ta.9423.1.A1_at	CK193717	-	-	5e+0	At5g53040	RWP-RK domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	3e-24	115	Arabidopsis thaliana	At5g06460	830534	ATUBA2	Encodes a ubiquitin-activating enzyme (E1), involved in the first step in conjugating multiple ubiquitins to proteins targeted for degradation. Gene is expressed in most tissues examined.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	6e-26	121	Glycine max	Gma.1973.1.S1_at	BE347331	-	-	3e-77	At2g30110	ATUBA1	C.G.	S.X.	Please select
0.69	0	1600	Hordeum vulgare	Contig8053_at	Contig8053	-	-	4e-32	At5g06460	ATUBA2	C.G.	S.X.	Please select
0.63	0	799	Oryza sativa	Os07g0692900	AK074007.1	-	Ubiquitin-activating enzyme E1 3	4e-20	At2g30110	ATUBA1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.25	7e-47	190	Populus trichocarpa	PtpAffx.200913.1.S1_at	pmrna1798	hypothetical protein	-	2e-104	At2g30110	ATUBA1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.08	7e-19	95	Vitis vinifera	1606497_at	CB346499	hypothetical protein LOC100260899	-	1e-17	At2g30110	ATUBA1	C.G.	S.X.	Please select
0.25	3e-31	137	Zea mays	Zm.6234.1.S1_at	AI670674	hypothetical protein LOC100279472	-	4e-28	At2g30110	ATUBA1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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